SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000413
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr19:12777480-12796827
Size: 19347
Super-enhancer rank 413
Number of SE elements: 7
ChIP density(Case|Control): 52796.0283|859.0068
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: JUNB ;
ROSE Overlap JUNB ; PRDX2 ;
ROSE Proximal ASNA1 ; HOOK2 ; RNASEH2A ; RTBDN ; C19orf43 ; MAST1 ; BEST2 ;
ROSE Closest JUNB ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RTBDN ; RNASEH2A ; MIR6794 ; TNPO2 ; C19orf43 ; FBXW9 ; PRDX2 ; MIR5684 ; HOOK2 ; MAST1 ; SNORD41 ; DNASE2 ; JUNB ; BEST2 ; ASNA1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000413 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers