SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000393
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr9:35726763-35737361
Size: 10598
Super-enhancer rank 393
Number of SE elements: 2
ChIP density(Case|Control): 53753.056|743.9796
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CREB3 ;
ROSE Overlap CREB3 ; TLN1 ; GBA2 ;
ROSE Proximal MSMP ; TPM2 ; RGP1 ;
ROSE Closest CREB3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA NPR2 ; MSMP ; TMEM8B ; TPM2 ; SPAG8 ; SIT1 ; CREB3 ; CCDC107 ; MIR6852 ; TLN1 ; FAM221B ; GBA2 ; HINT2 ; CA9 ; RGP1 ; MIR6853 ; ARHGEF39 ; RMRP ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000393 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers