SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000383
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr12:12802374-12841112
Size: 38738
Super-enhancer rank 383
Number of SE elements: 8
ChIP density(Case|Control): 56476.1302|2738.7766
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DDX47 ;
ROSE Overlap DDX47 ;
ROSE Proximal APOLD1 ; MIR613 ; RPL13AP20 ; GPRC5A ;
ROSE Closest DDX47 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MIR613 ; RPL13AP20 ; GPRC5A ; DDX47 ; APOLD1 ; MIR614 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000383 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers