SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000380
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr1:44806503-44820686
Size: 14183
Super-enhancer rank 380
Number of SE elements: 3
ChIP density(Case|Control): 55441.347|1387.0974
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: BTBD19 ;
ROSE Overlap BTBD19 ; PTCH2 ; TCTEX1D4 ;
ROSE Proximal SNORD55 ; BEST4 ; SNORD46 ; PLK3 ; SNORD38A ; PTCH2 ; SNORD38B ; RPS8 ;
ROSE Closest BTBD19 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SNORD55 ; KIF2C ; RNU5D-1 ; SNORD46 ; SNORD38B ; SNORD38A ; RNU5F-1 ; BEST4 ; BTBD19 ; TCTEX1D4 ; RPS8 ; PLK3 ; PTCH2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000380 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers