SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_001000333
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr3:149366215-149402572
Size: 36357
Super-enhancer rank 333
Number of SE elements: 7
ChIP density(Case|Control): 59530.9518|1850.5713
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TM4SF1 ;
ROSE Overlap TM4SF1 ;
ROSE Proximal TM4SF18 ;
ROSE Closest TM4SF1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TM4SF1-AS1 ; TM4SF1 ; TM4SF18 ; TM4SF4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000333 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers