SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000280
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr11:65416601-65437800
Size: 21199
Super-enhancer rank 280
Number of SE elements: 7
ChIP density(Case|Control): 63527.0433|733.4854
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NEAT1 ;
ROSE Overlap NEAT1 ;
ROSE Proximal FRMD8 ; SLC25A45 ; MIR612 ;
ROSE Closest NEAT1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SCYL1 ; SLC25A45 ; FRMD8 ; DPF2 ; MIR612 ; MALAT1 ; NEAT1 ; TIGD3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000280 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers