SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000205
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr19:18362796-18383953
Size: 21157
Super-enhancer rank 205
Number of SE elements: 5
ChIP density(Case|Control): 73821.0044|2086.0802
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GDF15 ;
ROSE Overlap PGPEP1 ;
ROSE Proximal LSM4 ; GDF15 ; MIR3189 ; SSBP4 ; LRRC25 ;
ROSE Closest GDF15 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LSM4 ; LRRC25 ; MIR3189 ; GDF15 ; JUND ; KIAA1683 ; ISYNA1 ; PGPEP1 ; SSBP4 ; MIR3188 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000205 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers