SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000195
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr7:27114032-27130158
Size: 16126
Super-enhancer rank 195
Number of SE elements: 1
ChIP density(Case|Control): 74963.3236|2388.2606
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXA3 ;
ROSE Overlap HOXA4 ; HOXA3 ;
ROSE Proximal HOXA6 ; HOXA10 ; HOXA5 ; HOXA7 ; HOXA1 ; HOXA2 ; HOXA9 ; MIR196B ;
ROSE Closest HOXA3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HOXA6 ; HOTAIRM1 ; HOXA-AS3 ; HOXA10 ; HOTTIP ; HOXA-AS2 ; HOXA13 ; MIR196B ; HOXA10-HOXA9 ; HOXA11-AS ; HOXA3 ; HOXA9 ; HOXA7 ; HOXA1 ; HOXA2 ; HOXA10-AS ; HOXA5 ; HOXA11 ; HOXA4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000195 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers