SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000138
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr1:212469132-212499169
Size: 30037
Super-enhancer rank 138
Number of SE elements: 4
ChIP density(Case|Control): 89191.8678|3739.6065
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NENF ;
ROSE Overlap ;
ROSE Proximal NENF ;
ROSE Closest NENF ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TMEM206 ; ATF3 ; NENF ; LOC101929565 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000138 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers