SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000117
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr17:40303268-40359037
Size: 55769
Super-enhancer rank 117
Number of SE elements: 12
ChIP density(Case|Control): 100144.3933|6943.2405
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RARA ;
ROSE Overlap RARA ;
ROSE Proximal RARA ; CDC6 ; GJD3 ;
ROSE Closest RARA ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RARA ; RARA-AS1 ; TOP2A ; GJD3 ; CDC6 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000117 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers