SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000055
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr21:41749453-41788103
Size: 38650
Super-enhancer rank 55
Number of SE elements: 9
ChIP density(Case|Control): 128167.265|4236.04
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RIPK4 ;
ROSE Overlap RIPK4 ;
ROSE Proximal NCRNA00112 ; C21orf129 ;
ROSE Closest RIPK4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MIR6814 ; RIPK4 ; LINC00112 ; LINC00111 ; LINC00479 ; PRDM15 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000055 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers