SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000038
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr1:156096354-156130901
Size: 34547
Super-enhancer rank 38
Number of SE elements: 10
ChIP density(Case|Control): 141946.7136|3516.8846
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LMNA ;
ROSE Overlap LMNA ;
ROSE Proximal ROBLD3 ; RAB25 ; SEMA4A ; UBQLN4 ; MEX3A ;
ROSE Closest LMNA ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PMF1-BGLAP ; SSR2 ; SLC25A44 ; LMNA ; RAB25 ; LAMTOR2 ; PMF1 ; SEMA4A ; UBQLN4 ; MEX3A ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000038 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers