SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000011
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr19:38647689-38737003
Size: 89314
Super-enhancer rank 11
Number of SE elements: 16
ChIP density(Case|Control): 226169.8422|7127.2572
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ACTN4 ;
ROSE Overlap ACTN4 ; CAPN12 ;
ROSE Proximal EIF3K ; LGALS7 ; MAP4K1 ;
ROSE Closest ACTN4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MAP4K1 ; ACTN4 ; LGALS7B ; CAPN12 ; LGALS7 ; EIF3K ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000011 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers