SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000001
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr17:59748438-59859645
Size: 111207
Super-enhancer rank 1
Number of SE elements: 25
ChIP density(Case|Control): 406194.6882|7350.7827
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR21 ;
ROSE Overlap TUBD1 ; MIR21 ; TMEM49 ;
ROSE Proximal PTRH2 ; RPS6KB1 ; TUBD1 ;
ROSE Closest MIR21 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TUBD1 ; RPS6KB1 ; VMP1 ; PTRH2 ; MIR21 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000001 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers