SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900564
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr3:9976024-9980092
Size: 4068
Super-enhancer rank 564
Number of SE elements: 1
ChIP density(Case|Control): 24330.708|974.286
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TMEM111 ;
ROSE Overlap TMEM111 ;
ROSE Proximal FANCD2 ; CRELD1 ; LOC401052 ; CIDECP ; PRRT3 ;
ROSE Closest TMEM111 ;
Lasso ;
PreSTIGE CIDECP ; CRELD1 ; EC3 ; FANCD2 ; IL17RC ; LOC401052 ;
ABC ;
BETA CIDECP ; EMC3 ; CIDEC ; IL17RE ; CRELD1 ; IL17RC ; PRRT3 ; FANCD2 ; PRRT3-AS1 ; JAGN1 ; LOC401052 ; EMC3-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900564 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers