SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900553
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr19:788585-801689
Size: 13104
Super-enhancer rank 553
Number of SE elements: 3
ChIP density(Case|Control): 25259.2704|1529.2368
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PTBP1 ;
ROSE Overlap PTBP1 ;
ROSE Proximal LPPR3 ; AZU1 ; PRTN3 ; C19orf21 ; PTBP1 ; MIR3187 ;
ROSE Closest PTBP1 ;
Lasso ;
PreSTIGE ;
ABC PTBP1 ; MISP ; PLPPR3 ; CFD ; MED16 ; R3HDM4 ; WDR18 ; PALM ; KISS1R ; ARID3A ; PRSS57 ; RNF126 ;
BETA RNU6-7 ; ELANE ; RNU6-1 ; RNU6-2 ; PTBP1 ; MIR3187 ; PALM ; AZU1 ; MISP ; RNU6-8 ; MED16 ; LPPR3 ; RNU6-9 ; MIR4745 ; PRSS57 ; PRTN3 ; CFD ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900553 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers