SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003900540
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr17:63769885-63776709
Size: 6824
Super-enhancer rank 540
Number of SE elements: 2
ChIP density(Case|Control): 25684.1712|1453.512
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CCDC47 ;
ROSE Overlap CCDC47 ; DDX42 ;
ROSE Proximal DDX42 ; STRADA ;
ROSE Closest CCDC47 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA STRADA ; LOC729683 ; DDX42 ; PSMC5 ; TCAM1P ; CCDC47 ; FTSJ3 ; SMARCD2 ; LIMD2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900540 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers