SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900514
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr12:47773216-47778534
Size: 5318
Super-enhancer rank 514
Number of SE elements: 1
ChIP density(Case|Control): 25946.522|868.9612
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SLC48A1 ;
ROSE Overlap SLC48A1 ;
ROSE Proximal HDAC7 ; RAPGEF3 ; ENDOU ;
ROSE Closest SLC48A1 ;
Lasso RPAP3 ; SLC48A1 ;
PreSTIGE ;
ABC ;
BETA RPAP3 ; ENDOU ; HDAC7 ; RAPGEF3 ; SLC48A1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900514 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers