SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900508
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr9:35723727-35733602
Size: 9875
Super-enhancer rank 508
Number of SE elements: 3
ChIP density(Case|Control): 26334.65|992.4375
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CREB3 ;
ROSE Overlap CREB3 ; TLN1 ;
ROSE Proximal MSMP ; TPM2 ; GBA2 ; CA9 ; RGP1 ;
ROSE Closest CREB3 ;
Lasso CCDC107 ; CREB3 ; GBA2 ; SP ; RGP1 ; TESK1 ; TLN1 ; TP2 ;
PreSTIGE C9orf100 ; CA9 ; HINT2 ; SP ; RRP ;
ABC MSMP ; RGP1 ; GBA2 ; TLN1 ; CREB3 ; TPM2 ; CA9 ; ARHGEF39 ; CCDC107 ; LOC101926948 ; CD72 ; TESK1 ; HRCT1 ; RECK ; TMEM8B ; FAM221B ; HINT2 ; SPAG8 ; RUSC2 ; FAM166B ;
BETA NPR2 ; MSMP ; TPM2 ; SPAG8 ; SIT1 ; CREB3 ; CCDC107 ; MIR6852 ; TLN1 ; GBA2 ; HINT2 ; CA9 ; RGP1 ; MIR6853 ; ARHGEF39 ; RMRP ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900508 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers