SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900499
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr1:161158291-161167668
Size: 9377
Super-enhancer rank 499
Number of SE elements: 3
ChIP density(Case|Control): 26929.8063|1406.55
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PPOX ;
ROSE Overlap USP21 ; UFC1 ; PPOX ;
ROSE Proximal NDUFS2 ; DEDD ; NIT1 ; PPOX ; FCER1G ; PFDN2 ; B4GALT3 ; ADAMTS4 ;
ROSE Closest PPOX ;
Lasso DEDD ; F11R ; NIT1 ; PFDN2 ; PPOX ; TO40L ; USF1 ;
PreSTIGE ;
ABC ;
BETA USP21 ; NR1I3 ; NIT1 ; DEDD ; UFC1 ; PPOX ; TOMM40L ; NDUFS2 ; PVRL4 ; FCER1G ; MIR5187 ; ARHGAP30 ; KLHDC9 ; ADAMTS4 ; PCP4L1 ; B4GALT3 ; APOA2 ; PFDN2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900499 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers