SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003900497
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr19:55005158-55043491
Size: 38333
Super-enhancer rank 497
Number of SE elements: 5
ChIP density(Case|Control): 28427.7528|2809.8089
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GP6 ;
ROSE Overlap GP6 ;
ROSE Proximal GP6 ; RDH13 ; EPS8L1 ; NLRP2 ;
ROSE Closest GP6 ;
Lasso EPS8L1 ; GP6 ; NCR1 ; NLRP2 ; NLRP7 ; RDH13 ; TNNI3 ;
PreSTIGE EPS8L1 ; GP6 ; NCR1 ; NLRP2 ; PPP1R12C ; RDH13 ;
ABC ;
BETA RDH13 ; PPP1R12C ; NLRP7 ; EPS8L1 ; NLRP2 ; GP6 ; MIR7975 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900497 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers