SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900471
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr19:49127587-49162213
Size: 34626
Super-enhancer rank 471
Number of SE elements: 6
ChIP density(Case|Control): 30498.5808|3708.4446
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HRC ;
ROSE Overlap HRC ; TRPM4 ; PPFIA3 ;
ROSE Proximal SNRNP70 ; LIN7B ; TRPM4 ; C19orf73 ;
ROSE Closest HRC ;
Lasso ;
PreSTIGE C19orf73 ; HRC ; LIN7B ; PPFIA3 ; SNRNP70 ; TRP4 ;
ABC FAM83E ; SPHK2 ; RPL18 ; SEC1P ; DBP ; CA11 ;
BETA SNRNP70 ; NTF4 ; PPFIA3 ; CGB8 ; CGB7 ; C19orf73 ; TRPM4 ; KCNA7 ; LIN7B ; HRC ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900471 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers