SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900422
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr19:55202036-55218195
Size: 16159
Super-enhancer rank 422
Number of SE elements: 4
ChIP density(Case|Control): 30375.6882|1735.4766
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PTPRH ;
ROSE Overlap PTPRH ;
ROSE Proximal SYT5 ; C19orf51 ; PPP6R1 ; TMEM86B ; TNNI3 ;
ROSE Closest PTPRH ;
Lasso ;
PreSTIGE BRSK1 ; DNAAF3 ; HSPBP1 ; PPP1R12C ; PPP6R1 ; PTPRH ; SYT5 ; TE86B ; TNNI3 ; TNNT1 ;
ABC LILRP2 ;
BETA DNAAF3 ; PPP1R12C ; MIR6804 ; PTPRH ; SYT5 ; PPP6R1 ; TNNI3 ; TNNT1 ; HSPBP1 ; TMEM86B ; MIR6803 ; MIR7975 ; MIR6802 ; BRSK1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900422 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers