SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003900420
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr12:46370735-46386174
Size: 15439
Super-enhancer rank 420
Number of SE elements: 3
ChIP density(Case|Control): 30692.732|1994.7188
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SLC38A2 ;
ROSE Overlap SLC38A2 ;
ROSE Proximal ;
ROSE Closest SLC38A2 ;
Lasso SCAF11 ; SLC38A1 ;
PreSTIGE ;
ABC SCAF11 ;
BETA LOC100288798 ; SLC38A2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900420 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers