SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900401
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr6:30872018-30886975
Size: 14957
Super-enhancer rank 401
Number of SE elements: 3
ChIP density(Case|Control): 32001.9972|2750.5923
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DDR1 ;
ROSE Overlap DDR1 ;
ROSE Proximal DDR1 ; SFTA2 ; GTF2H4 ; VARS2 ;
ROSE Closest DDR1 ;
Lasso DDR1 ; FLOT1 ; GTF2H4 ; IER3 ; DC1 ; TUBB ;
PreSTIGE ;
ABC VARS2 ;
BETA DPCR1 ; GTF2H4 ; VARS2 ; DDR1 ; LINC00243 ; SFTA2 ; MIR4640 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900401 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers