SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900400
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chrX:153965687-153974915
Size: 9228
Super-enhancer rank 400
Number of SE elements: 1
ChIP density(Case|Control): 30177.4056|831.4428
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HCFC1 ;
ROSE Overlap HCFC1 ; TMEM187 ;
ROSE Proximal MIR718 ; ARHGAP4 ; MIR3202-1 ; NAA10 ; RENBP ; MIR3202-2 ; IRAK1 ;
ROSE Closest HCFC1 ;
Lasso ;
PreSTIGE ;
ABC GAB3 ;
BETA AVPR2 ; IRAK1 ; L1CAM ; ARHGAP4 ; RENBP ; LCA10 ; MIR718 ; NAA10 ; TMEM187 ; HCFC1 ; MIR3202-2 ; MIR3202-1 ; HCFC1-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900400 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers