SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900359
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr12:54351248-54394316
Size: 43068
Super-enhancer rank 359
Number of SE elements: 9
ChIP density(Case|Control): 36633.6408|5840.0208
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GPR84 ;
ROSE Overlap ZNF385A ; GPR84 ; COPZ1 ;
ROSE Proximal MIR148B ; ITGA5 ; ZNF385A ;
ROSE Closest GPR84 ;
Lasso ;
PreSTIGE COPZ1 ; ITGA5 ; NFE2 ; ZNF385A ;
ABC HOXC9 ; HOXC-AS1 ; HOXC-AS2 ; HOXC-AS3 ; HOXC10 ;
BETA ITGA5 ; COPZ1 ; ZNF385A ; NFE2 ; LOC102724050 ; HNRNPA1 ; CBX5 ; MIR148B ; GPR84 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900359 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers