SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900294
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr19:18401423-18442822
Size: 41399
Super-enhancer rank 294
Number of SE elements: 5
ChIP density(Case|Control): 36638.115|3386.4382
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SSBP4 ;
ROSE Overlap SSBP4 ; ELL ; ISYNA1 ;
ROSE Proximal ISYNA1 ; GDF15 ; MIR3189 ; SSBP4 ; LRRC25 ;
ROSE Closest SSBP4 ;
Lasso GDF15 ; ISYNA1 ; JUND ; KIAA1683 ; LS4 ; PGPEP1 ; SSBP4 ;
PreSTIGE ISYNA1 ; LRRC25 ; LS4 ; PGPEP1 ; SSBP4 ;
ABC KIAA1683 ; LOC729966 ; JUND ; LSM4 ; PGPEP1 ;
BETA LSM4 ; LRRC25 ; MIR3189 ; GDF15 ; ISYNA1 ; PGPEP1 ; SSBP4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900294 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers