SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900293
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr12:56683989-56699479
Size: 15490
Super-enhancer rank 293
Number of SE elements: 5
ChIP density(Case|Control): 35242.848|1968.779
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PTGES3 ;
ROSE Overlap PTGES3 ;
ROSE Proximal SNORD59B ; BAZ2A ; SNORD59A ; NACA ; ATP5B ;
ROSE Closest PTGES3 ;
Lasso ATP5B ; BAZ2A ; HSD17B6 ; NAB2 ; ORDL2 ; PRI1 ; RBS2 ; SARNP ;
PreSTIGE ATP5B ; BAZ2A ; NACA ; PRI1 ;
ABC CS ;
BETA PTGES3 ; NACA ; HSD17B6 ; PRIM1 ; BAZ2A ; SNORD59A ; SNORD59B ; ATP5B ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900293 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers