SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900280
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr12:123363039-123390629
Size: 27590
Super-enhancer rank 280
Number of SE elements: 5
ChIP density(Case|Control): 36046.335|2414.125
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SETD8 ;
ROSE Overlap SETD8 ;
ROSE Proximal SBNO1 ; RILPL2 ;
ROSE Closest SETD8 ;
Lasso ATP6V0A2 ; CDK2AP1 ; RILPL2 ; SBNO1 ; SETD8 ; SNRNP35 ;
PreSTIGE RILPL2 ; SBNO1 ; SETD8 ;
ABC VPS37B ; ABCB9 ; HIP1R ;
BETA SNRNP35 ; SBNO1 ; RILPL2 ; SETD8 ; MIR8072 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900280 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers