SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003900224
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr19:47099311-47114578
Size: 15267
Super-enhancer rank 224
Number of SE elements: 3
ChIP density(Case|Control): 39950.6856|2099.2125
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ZC3H4 ;
ROSE Overlap ZC3H4 ;
ROSE Proximal SAE1 ;
ROSE Closest ZC3H4 ;
Lasso AP2S1 ; BBC3 ; CCDC9 ; DHX34 ; PRR24 ; SLC1A5 ; TE160 ;
PreSTIGE ;
ABC PPP5D1 ; CALM3 ;
BETA SAE1 ; ZC3H4 ; TMEM160 ; NPAS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900224 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers