SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900223
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr12:120290581-120293899
Size: 3318
Super-enhancer rank 223
Number of SE elements: 2
ChIP density(Case|Control): 38676.9306|800.9652
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SIRT4 ;
ROSE Overlap ;
ROSE Proximal PLA2G1B ; PXN ; SIRT4 ;
ROSE Closest SIRT4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PXN-AS1 ; SIRT4 ; MSI1 ; GCN1L1 ; RNU4-1 ; RPLP0 ; PXN ; PLA2G1B ; RNU4-2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900223 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers