SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003900179
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr1:149848265-149856533
Size: 8268
Super-enhancer rank 179
Number of SE elements: 1
ChIP density(Case|Control): 43574.733|2187.7455
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HIST2H2BC ;
ROSE Overlap HIST2H2BC ; HIST2H3A ; HIST2H2AA4 ;
ROSE Proximal HIST2H2BF ; BOLA1 ; HIST2H4B ; HIST2H3D ; HIST2H2BE ; HIST2H2AB ; HIST2H2AC ; HIST2H3C ; HIST2H2AA3 ;
ROSE Closest HIST2H2BC ;
Lasso ;
PreSTIGE ;
ABC LOC105371433 ; HIST2H2AB ; PLEKHO1 ; VPS45 ; OTUD7B ; SF3B4 ; MTMR11 ; HIST2H2BE ; HIST2H3D ; HIST2H2AC ;
BETA HIST2H2AA3 ; HIST2H2BF ; HIST2H2BE ; SV2A ; HIST2H3A ; MTMR11 ; HIST2H2AB ; HIST2H4A ; HIST2H2AC ; SF3B4 ; FCGR1A ; HIST2H2BC ; HIST2H4B ; HIST2H2AA4 ; HIST2H3D ; HIST2H3C ; BOLA1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900179 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers