SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003900159
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr19:49869689-49890595
Size: 20906
Super-enhancer rank 159
Number of SE elements: 3
ChIP density(Case|Control): 46887.9768|2247.395
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TBC1D17 ;
ROSE Overlap IL4I1 ; AKT1S1 ; TBC1D17 ;
ROSE Proximal ATF5 ; NUP62 ; PNKP ; PTOV1 ;
ROSE Closest TBC1D17 ;
Lasso ;
PreSTIGE AP2A1 ; LOC100506033 ; NUP62 ; TSKS ;
ABC ;
BETA TBC1D17 ; SIGLEC11 ; PTOV1 ; NUP62 ; AKT1S1 ; FUZ ; ATF5 ; MIR4750 ; PNKP ; MIR6799 ; IL4I1 ; MIR6800 ; PTOV1-AS1 ; PTOV1-AS2 ; SIGLEC16 ; MED25 ; MIR4751 ; MIR4749 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900159 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers