SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900157
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr3:46964984-46990147
Size: 25163
Super-enhancer rank 157
Number of SE elements: 3
ChIP density(Case|Control): 48743.2473|3860.0042
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CCDC12 ;
ROSE Overlap CCDC12 ; NBEAL2 ;
ROSE Proximal NRADDP ;
ROSE Closest CCDC12 ;
Lasso KIF9 ; KLHL18 ; PTPN23 ;
PreSTIGE CCDC12 ; NBEAL2 ; NRADDP ;
ABC CCDC12 ; NBEAL2 ;
BETA PTH1R ; NBEAL2 ; CCDC12 ; NRADDP ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900157 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers