SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900115
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr11:3824573-3879023
Size: 54450
Super-enhancer rank 115
Number of SE elements: 9
ChIP density(Case|Control): 59426.73|7786.35
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: STIM1 ;
ROSE Overlap PGAP2 ; STIM1 ; RHOG ;
ROSE Proximal PGAP2 ; NUP98 ;
ROSE Closest STIM1 ;
Lasso NUP98 ; PGAP2 ; RHOG ; STI1 ;
PreSTIGE NUP98 ; PGAP2 ; RHOG ; STI1 ;
ABC NUP98 ; PGAP2 ; RHOG ; MRGPRE ; TRPC2 ; OR51D1 ; ART1 ; STIM1 ; RRM1 ; TRIM21 ; LOC100506082 ; ART5 ;
BETA PGAP2 ; NUP98 ; STIM1 ; MIR4687 ; RHOG ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900115 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers