SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900111
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr17:48618755-48648051
Size: 29296
Super-enhancer rank 111
Number of SE elements: 8
ChIP density(Case|Control): 55852.824|3761.6064
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR196A1 ;
ROSE Overlap HOXB9 ; MIR196A1 ;
ROSE Proximal LOC404266 ; HOXB3 ; HOXB4 ; HOXB5 ; MIR10A ; HOXB6 ; HOXB8 ; HOXB7 ;
ROSE Closest MIR196A1 ;
Lasso ;
PreSTIGE HOXB2 ; HOXB3 ; HOXB4 ; HOXB5 ; HOXB6 ; HOXB7 ; HOXB8 ; HOXB9 ;
ABC SPATA20 ;
BETA HOXB3 ; HOXB-AS3 ; PRAC2 ; HOXB-AS1 ; HOXB5 ; MIR196A1 ; HOXB9 ; MIR10A ; HOXB8 ; HOXB13 ; HOXB7 ; HOXB6 ; PRAC1 ; MIR3185 ; HOXB4 ; HOXB2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900111 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers