SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_01_003900107
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr5:139635856-139673508
Size: 37652
Super-enhancer rank 107
Number of SE elements: 9
ChIP density(Case|Control): 56587.1908|4149.2504
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CXXC5 ;
ROSE Overlap CXXC5 ;
ROSE Proximal ;
ROSE Closest CXXC5 ;
Lasso ;
PreSTIGE ;
ABC HBEGF ; PFDN1 ;
BETA CXXC5 ; UBE2D2 ; LOC101929696 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900107 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers