SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900028
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr11:65403355-65430660
Size: 27305
Super-enhancer rank 28
Number of SE elements: 3
ChIP density(Case|Control): 85573.87|3860.927
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NEAT1 ;
ROSE Overlap FRMD8 ; NEAT1 ;
ROSE Proximal TIGD3 ; SLC25A45 ; MIR612 ;
ROSE Closest NEAT1 ;
Lasso ;
PreSTIGE FRD8 ; ALAT1 ;
ABC SIPA1 ; RELA ; KAT5 ; MAP3K11 ; PCNX3 ;
BETA SLC25A45 ; FRMD8 ; DPF2 ; MIR612 ; MALAT1 ; NEAT1 ; TIGD3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900028 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers