SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000143184
Gene: XCL1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:168576605-168582069 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_063000001 chr1:168436635-168559496 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 1 27 3693 246 12 181 183 XCL2,LOC101928565,XCL1,LOC100505918
SE_02_063100001 chr1:168438072-168559282 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 1 23 3643 244 12 177 183 XCL2,LOC101928565,XCL1,LOC100505918
SE_02_154200001 chr1:168438773-168559716 Sample_02_1542 Gastrointestinal Stromal GIST-T1 1 25 3641 246 12 174 183 XCL2,LOC101928565,XCL1,LOC100505918
SE_02_062900001 chr1:168438959-168559469 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 1 21 3624 244 12 174 183 XCL2,LOC101928565,XCL1,LOC100505918
SE_02_130100110 chr1:168465073-168554618 Sample_02_1301 Blood PER-117 110 16 2735 204 10 135 183 XCL2,LOC101928565,XCL1,LOC100505918
SE_02_111900404 chr1:168465147-168555257 Sample_02_1119 Blood KBM7 404 33 2751 207 10 137 183 XCL2,LOC101928565,XCL1,LOC100505918
SE_02_017600145 chr1:168469228-168559647 Sample_02_0176 Peripheral blood LOUCY 145 9 2751 225 12 136 183 XCL2,XCL1
SE_02_014600422 chr1:168497481-168536835 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 422 5 1128 77 7 61 0 XCL1,XCL2
SE_02_084100326 chr1:168498456-168554207 Sample_02_0841 Blood THP-1_untr 326 14 1767 159 8 84 183 XCL2,XCL1,LOC101928565
SE_01_004400149 chr1:168500604-168558693 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 149 7 1826 174 10 102 183 XCL2,XCL1
SE_02_135000827 chr1:168502106-168537188 Sample_02_1350 Leukophereses leukophereses_p456 827 11 1011 66 7 55 0 XCL1,LOC101928565,XCL2
SE_00_000900577 chr1:168504240-168558109 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 577 9 1699 165 10 102 183 XCL2,XCL1
SE_00_002700533 chr1:168508685-168558290 Sample_00_0027 Blood natural-killer-cell 533 8 1591 159 9 86 183 XCL2,XCL1
SE_02_022200233 chr1:168508773-168557111 Sample_02_0222 Blood DU-528 233 5 1558 156 8 81 183 XCL2,XCL1
SE_01_004300519 chr1:168512321-168557322 Sample_01_0043 Blood KOPT-K1 519 5 1451 148 9 76 183 XCL2,XCL1
SE_02_006000340 chr1:168512377-168537428 Sample_02_0060 Haematopoietic and lymphoid tissue blood WT-11bp/Jurkat 340 3 719 48 6 34 0 XCL1,XCL2
SE_02_134000246 chr1:168518894-168539131 Sample_02_1340 Blood acute myeloid leukemia 246 7 574 40 6 30 0 XCL1,LOC101928565,XCL2
SE_02_154400092 chr1:168528930-168544670 Sample_02_1544 Gastrointestinal Stromal GIST-882 92 1 521 50 2 41 183 XCL2,XCL1,LOC101928565
SE_02_155600628 chr1:168540641-168557368 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 628 5 634 96 3 41 180 XCL2,XCL1,LOC101928565
SE_02_154500134 chr1:168553265-168560088 Sample_02_1545 Gastrointestinal Stromal GIST-T1/816 134 1 193 31 2 20 0 XCL1,XCL2
SE_02_042100384 chr1:168603059-168616926 Sample_02_0421 Brain BE2C_3 384 3 381 12 0 68 0 XCL1,DPT
SE_01_007600397 chr1:168603357-168639345 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 397 2 1037 32 3 98 0 XCL1,DPT
SE_02_036700574 chr1:168603395-168638160 Sample_02_0367 Skeletal muscle NS129 574 7 998 32 2 97 0 XCL1
SE_02_110400644 chr1:168603750-168616605 Sample_02_1104 Brain NB-69 644 3 346 10 0 64 0 XCL1,DPT
SE_01_009700411 chr1:168603810-168638938 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 411 11 1008 30 3 94 0 XCL1,DPT
SE_02_152200125 chr1:168604713-168639215 Sample_02_1522 Skin A375 RTKi 125 7 989 28 3 92 0 XCL1
SE_01_009400451 chr1:168606482-168639013 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 451 10 928 26 3 80 0 XCL1,DPT
SE_00_003200238 chr1:168606740-168637960 Sample_00_0032 Psoas muscle psoas-muscle_30y 238 7 894 26 2 71 0 XCL1,DPT
SE_02_150301067 chr1:168610435-168654654 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 1067 12 1295 39 5 66 0 XCL1
SE_02_150200894 chr1:168612070-168637954 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 894 8 747 21 2 47 0 XCL1
SE_02_150100784 chr1:168612157-168654528 Sample_02_1501 Brain SHEP-21N_NOSPIKE 784 15 1252 36 5 66 0 XCL1
SE_02_096000360 chr1:168612879-168621729 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 360 7 253 8 1 22 0 XCL1
SE_02_150700749 chr1:168613123-168637495 Sample_02_1507 Brain SHEP-21N_DOX_24h 749 4 708 21 2 41 0 XCL1
SE_00_005300999 chr1:168619256-168632229 Sample_00_0053 Embryo trophoblast cell originated from H1 999 7 389 14 2 19 0 XCL1,DPT
Genomic distribution of SEs associated with XCL1
Genome Browser

The strength of the tissue affected by the gene

Expression of XCL1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)