SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000115596
Gene: WNT6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:218859805-218874233 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_080800630 chr2:218778509-218821078 Sample_02_0808 Ovary RMG1_ARID1A KO 630 25 1036 119 3 57 1061 CYP27A1,MIR9500,WNT6,PRKAG3
SE_02_093700390 chr2:218779022-218817017 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 390 12 930 108 3 57 890 CYP27A1,MIR9500,WNT6,PRKAG3
SE_01_007600501 chr2:218801407-218840076 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 501 3 1031 77 3 145 2369 PRKAG3,CYP27A1,WNT6,WNT10A
SE_02_036700551 chr2:218801560-218834218 Sample_02_0367 Skeletal muscle NS129 551 9 900 66 2 133 2369 PRKAG3,CYP27A1,WNT6,WNT10A
SE_01_009400729 chr2:218802390-218839917 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 729 6 1000 72 3 145 2369 CYP27A1,MIR9500,PRKAG3,WNT10A,WNT6
SE_01_009700606 chr2:218802408-218839946 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 606 7 999 72 3 145 2369 CYP27A1,MIR9500,PRKAG3,WNT10A,WNT6
SE_00_003200339 chr2:218805306-218839522 Sample_00_0032 Psoas muscle psoas-muscle_30y 339 9 923 58 3 145 2369 PRKAG3,CYP27A1,WNT6,WNT10A
SE_01_011500486 chr2:218805444-218834855 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 486 6 826 51 2 136 2369 CYP27A1,MIR9500,PRKAG3,WNT10A,WNT6
SE_02_036800437 chr2:218805891-218835711 Sample_02_0368 Skeletal muscle NS134 437 5 840 50 3 141 2369 PRKAG3,CYP27A1,WNT6,WNT10A
SE_02_037200487 chr2:218829084-218835652 Sample_02_0372 Skeletal muscle RMS008 487 2 197 12 2 58 427 PRKAG3,WNT6,WNT10A,CYP27A1
SE_02_037200182 chr2:218875852-218910188 Sample_02_0372 Skeletal muscle RMS008 182 6 795 31 6 360 1010 WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_021101078 chr2:218876547-218897530 Sample_02_0211 Lung MRC-5_NFD_1DPT 1078 6 477 20 5 328 866 WNT10A,PRKAG3,WNT6
SE_02_042400367 chr2:218876744-218910253 Sample_02_0424 Colon SW620 367 4 781 31 6 354 1010 WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_035600207 chr2:218876834-218910281 Sample_02_0356 Colon Sw480 207 4 781 31 6 354 1010 WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_122500388 chr2:218876844-218910496 Sample_02_1225 Bone marrow RAJI 388 13 783 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_123700156 chr2:218876848-218909826 Sample_02_1237 Skin MKL2_virus_positive 156 10 775 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_123900258 chr2:218876863-218909898 Sample_02_1239 Skin Waga_virus_positive 258 12 776 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_073100097 chr2:218876869-218910607 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 97 5 783 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_123600144 chr2:218876870-218909911 Sample_02_1236 Skin MKL1_virus_positive 144 11 776 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2,FEV,CRYBA2
SE_02_104000123 chr2:218876893-218909467 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 123 18 764 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6
SE_02_122100056 chr2:218876906-218909765 Sample_02_1221 Bone marrow KMS11 56 5 773 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_073200094 chr2:218876909-218910620 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 94 9 782 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_111100997 chr2:218876925-218910248 Sample_02_1111 Other HGrC1_SMAD2/3KO 997 6 777 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_123800079 chr2:218876966-218909826 Sample_02_1238 Skin MS1_virus_positive 79 9 773 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2,ZNF142,BCS1L,TTLL4,STK36,FEV,CRYBA2
SE_02_050700081 chr2:218877275-218909420 Sample_02_0507 Esophagus TE7_1 81 11 754 30 5 354 1010 LINC01494,WNT10A,PRKAG3,WNT6
SE_02_102500342 chr2:218877289-218898348 Sample_02_1025 Esophagus KYSE150 342 4 475 21 5 340 866 WNT10A,PRKAG3,WNT6,LINC01494
SE_02_073000140 chr2:218877314-218910613 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 140 10 771 31 6 354 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_148900287 chr2:218877350-218896890 Sample_02_1489 Bone TC-106 287 7 451 20 5 305 866 WNT10A,PRKAG3,WNT6,LINC01494
SE_02_022700061 chr2:218877482-218909450 Sample_02_0227 Oesophagus TE7 61 11 749 30 5 354 1010 WNT10A,PRKAG3,WNT6
SE_02_148600287 chr2:218877627-218898466 Sample_02_1486 Bone SK-N-MC 287 10 469 21 5 337 866 WNT10A,PRKAG3,WNT6,LINC01494
SE_02_052100170 chr2:218877783-218910053 Sample_02_0521 Colon SW480 170 5 751 30 5 344 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_153900360 chr2:218878027-218909768 Sample_02_1539 Nasopharyngeal C666-1 360 6 742 30 4 337 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_081900412 chr2:218878210-218910066 Sample_02_0819 Ovary Mucinous ovarian cancer 412 5 736 30 5 327 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_011800357 chr2:218878289-218898218 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 357 4 442 21 4 310 866 WNT10A,PRKAG3,WNT6
SE_00_000800416 chr2:218879108-218898966 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 416 2 434 22 4 306 866 WNT10A,PRKAG3,WNT6
SE_02_094800390 chr2:218879704-218909659 Sample_02_0948 Pharyng Detroit562 390 3 688 27 4 303 1010 LINC01494,WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_006300558 chr2:218879763-218910172 Sample_02_0063 Skin Keratinocytes 558 3 691 28 5 300 1010 WNT10A,PRKAG3,WNT6,CDK5R2
SE_02_094500090 chr2:218880086-218898209 Sample_02_0945 Brain SF767 90 3 393 18 4 278 866 WNT10A,PRKAG3,WNT6,LINC01494
SE_02_047900504 chr2:218882471-218909878 Sample_02_0479 Head and neck SCC25 504 4 631 23 2 218 621 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_049200507 chr2:218882474-218909849 Sample_02_0492 Pharyng Detroit 562_LPS 507 4 631 23 2 218 620 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_049100574 chr2:218882492-218909851 Sample_02_0491 Pharyng Detroit 562-Control 574 4 631 23 2 218 617 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_154100872 chr2:218882554-218909450 Sample_02_1541 Nasopharyngeal HNE1 872 5 619 23 2 218 602 LINC01494,WNT10A,WNT6
SE_02_112100836 chr2:218882562-218897620 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 836 8 327 13 2 191 457 WNT10A,LINC01494,WNT6
SE_02_103700600 chr2:218882576-218909864 Sample_02_1037 Pharynx FaDu Control 600 6 630 23 2 218 595 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_136500202 chr2:218882579-218909875 Sample_02_1365 Pancreas AsPC1-untreated 202 5 630 23 2 218 595 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_132300378 chr2:218882587-218898378 Sample_02_1323 Colon DLD1_WT 378 4 340 14 2 206 448 WNT10A,LINC01494,WNT6
SE_02_104500506 chr2:218882887-218909413 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 506 8 611 23 2 218 592 LINC01494,WNT10A,WNT6
SE_02_094700455 chr2:218882892-218909907 Sample_02_0947 Tongue Cal27 455 4 622 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_136600282 chr2:218882947-218909871 Sample_02_1366 Pancreas BxPC3-untreated 282 3 622 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_070500336 chr2:218882985-218909837 Sample_02_0705 Pancreas AsPC1 WT 336 6 621 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_094600571 chr2:218883011-218909724 Sample_02_0946 Tongue HN12 571 3 619 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_064501734 chr2:218883012-218908974 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1734 5 595 23 2 218 592 LINC01494,WNT10A,WNT6
SE_02_072500539 chr2:218883048-218897183 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 539 8 313 13 2 171 448 WNT10A,LINC01494,WNT6
SE_00_004700382 chr2:218883048-218898179 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 382 5 329 14 2 201 448 WNT10A,LINC01494,WNT6
SE_02_071300918 chr2:218883059-218909878 Sample_02_0713 Pancreas BxPC3_sgTP63 918 4 621 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_071201395 chr2:218883077-218909891 Sample_02_0712 Pancreas BxPC3_sgNEG 1395 4 621 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_088400755 chr2:218883079-218910185 Sample_02_0884 Colon LoVo 755 4 623 24 3 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_137100768 chr2:218883177-218909925 Sample_02_1371 Pancreas Patu899S-untreated 768 4 619 23 2 218 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_059200215 chr2:218883271-218908988 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 215 6 593 23 2 218 592 LINC01494,WNT10A,WNT6
SE_02_016700504 chr2:218883372-218910192 Sample_02_0167 Mammary gland HCC1954_LCC2 504 4 619 24 3 218 592 WNT10A,WNT6,CDK5R2
SE_02_105400598 chr2:218883413-218909564 Sample_02_1054 Esophagus SKGT4 598 4 610 23 2 218 592 LINC01494,WNT10A,WNT6
SE_02_105100538 chr2:218883496-218909844 Sample_02_1051 Esophagus Eso26 538 7 613 23 2 217 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_064601286 chr2:218883546-218908864 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1286 5 583 23 2 216 592 LINC01494,WNT10A,WNT6
SE_02_105200330 chr2:218883565-218898463 Sample_02_1052 Esophagus JH-EsoAd1 330 7 326 14 2 204 448 WNT10A,LINC01494,WNT6
SE_02_035800296 chr2:218883567-218909968 Sample_02_0358 Colon LS180 296 3 613 23 2 216 592 WNT10A,WNT6,CDK5R2
SE_02_024000562 chr2:218883576-218909956 Sample_02_0240 Colon V429_2 562 3 613 23 2 212 592 WNT10A,WNT6,CDK5R2
SE_02_024100708 chr2:218883618-218909621 Sample_02_0241 Colon V456 708 3 609 23 2 209 592 WNT10A,WNT6
SE_02_072600560 chr2:218883655-218896986 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 560 8 301 13 2 157 448 WNT10A,LINC01494,WNT6
SE_02_152500473 chr2:218883676-218910247 Sample_02_1525 Stomach N87 DMSO 473 3 613 23 3 206 592 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_036100434 chr2:218883684-218910137 Sample_02_0361 Colon HT29_DMSO 434 3 613 23 3 206 592 WNT10A,WNT6,CDK5R2
SE_02_114100216 chr2:218883726-218897750 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 216 3 308 12 2 180 448 WNT10A,LINC01494,WNT6
SE_02_104100199 chr2:218883996-218909437 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 199 9 597 22 2 201 592 LINC01494,WNT10A,WNT6
SE_02_104200703 chr2:218885345-218909412 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 703 7 573 21 2 193 592 LINC01494,WNT10A,WNT6
SE_02_079500482 chr2:218886769-218909454 Sample_02_0795 Brain 1953 482 5 535 18 2 167 592 LINC01494,WNT10A,WNT6
SE_02_133700130 chr2:218892128-218909449 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 130 5 418 16 1 126 441 LINC01494,WNT10A,WNT6
SE_02_125800652 chr2:218892223-218910233 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 652 2 430 17 2 126 441 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_133500274 chr2:218892262-218909511 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 274 5 420 16 1 126 441 LINC01494,WNT10A,WNT6
SE_02_048900520 chr2:218892285-218897954 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 520 2 133 7 1 101 297 WNT10A,LINC01494,WNT6
SE_02_137000521 chr2:218892409-218898124 Sample_02_1370 Pancreas Patu8902-untreated 521 2 133 7 1 109 297 WNT10A,LINC01494,WNT6
SE_02_113600485 chr2:218892421-218910097 Sample_02_1136 Bone U2OS-anaphase/telophase 485 2 427 17 2 126 441 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_071700623 chr2:218892445-218910083 Sample_02_0717 Pancreas HPAFII_GFP_DOX 623 2 426 16 2 122 441 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_147000755 chr2:218892452-218898109 Sample_02_1470 Umbilical Vein H441 755 2 132 7 1 104 297 WNT10A,LINC01494,WNT6
SE_02_080100585 chr2:218892651-218909389 Sample_02_0801 Brain 2235 585 5 409 16 1 122 432 LINC01494,WNT10A,WNT6
SE_02_126200842 chr2:218892750-218909425 Sample_02_1262 Bone Im-GCT-3504_G34W 842 4 407 16 1 122 409 LINC01494,WNT10A,WNT6
SE_02_070400288 chr2:218892972-218909832 Sample_02_0704 Pancreas HPAFII WT 288 6 409 16 1 104 359 LINC01494,WNT10A,WNT6,CDK5R2
SE_02_136900090 chr2:218893012-218909335 Sample_02_1369 Pancreas P4057-untreated 90 5 396 16 1 103 348 LINC01494,WNT10A,WNT6
SE_02_048800452 chr2:218893316-218897643 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 452 2 102 6 1 63 144 WNT10A,LINC01494,WNT6
SE_02_019100162 chr2:218893327-218909579 Sample_02_0191 Stomach SNU719 162 5 401 16 1 89 283 WNT10A,WNT6
Genomic distribution of SEs associated with WNT6
Genome Browser

The strength of the tissue affected by the gene

Expression of WNT6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)