SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000204815
Gene: TTC25 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:41930617-41966503 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900730 chr17:41851241-41928811 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 730 26 1904 197 2 339 2889 ACLY,KLHL11,TTC25,CNP,KLHL10,FKBP10,P3H4,NT5C3B
SE_02_046500343 chr17:41868742-41919030 Sample_02_0465 Adipose subcutaneous adipocytes 343 40 1270 125 1 204 2274 ACLY,TTC25,CNP,KLHL10,KLHL11,NT5C3B
SE_02_046600659 chr17:41870187-41919041 Sample_02_0466 Adipose visceral adipocytes 659 32 1235 119 1 191 2182 ACLY,TTC25,CNP,KLHL10,KLHL11,NT5C3B
SE_02_158000364 chr17:41874051-41917058 Sample_02_1580 Renal 786-O 364 14 1111 107 0 158 1863 ACLY,TTC25,CNP,KLHL10,KLHL11,NT5C3B
SE_02_080800433 chr17:41881589-41930508 Sample_02_0808 Ovary RMG1_ARID1A KO 433 31 1204 109 0 187 1868 ACLY,TTC25,CNP,KLHL10,KLHL11,NT5C3B
SE_02_110700220 chr17:41887691-41922980 Sample_02_1107 Brain SK-N-AS 220 13 873 93 0 160 1578 ACLY,TTC25,CNP,KLHL11,KLHL10
SE_02_077500345 chr17:41890437-41947178 Sample_02_0775 Pancreas EndoC-BH1_SE 345 19 1379 116 0 228 2180 TTC25,ACLY,CNP,KLHL11,HSPB9
SE_02_043000425 chr17:41891365-41918159 Sample_02_0430 Kidney 12364284 425 10 691 67 0 126 1393 ACLY,KLHL11,CNP,TTC25
SE_02_158300884 chr17:41891778-41916899 Sample_02_1583 Fetal lung IMR90_empty_GM 884 22 652 65 0 126 1393 ACLY,CNP,TTC25,KLHL11
SE_04_001000143 chr17:41891974-41920205 Sample_04_0010 Lung A549 TGFb 143 5 733 73 0 154 1544 ACLY,CNP,TTC25,KLHL11
SE_02_158200516 chr17:41892315-41917143 Sample_02_1582 Renal OS-RC-2 516 11 646 64 0 125 1337 ACLY,CNP,TTC25,KLHL11
SE_02_076201167 chr17:41892477-41920050 Sample_02_0762 Podocyte podocyte_CTL 1167 5 718 70 0 150 1467 ACLY,CNP,TTC25,KLHL11
SE_02_158100562 chr17:41893615-41917291 Sample_02_1581 Renal OS-LM1 562 13 620 60 0 112 1184 ACLY,CNP,TTC25,KLHL11
SE_02_104602945 chr17:41893709-41924861 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2945 10 782 70 0 146 1335 ACLY,CNP,TTC25,KLHL11
SE_02_123500059 chr17:41893739-41919018 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 59 9 662 63 0 124 1265 ACLY,CNP,TTC25,KLHL11
SE_02_042800507 chr17:41893886-41918171 Sample_02_0428 Kidney 12364284_VHL- 507 5 641 60 0 109 1184 ACLY,KLHL11,CNP,TTC25
SE_02_026500713 chr17:41894064-41920269 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 713 2 685 65 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_02_101701578 chr17:41894083-41921112 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1578 9 704 66 0 137 1335 ACLY,CNP,TTC25,KLHL11
SE_02_029600350 chr17:41894088-41921036 Sample_02_0296 Neuroblastoma CLB-BER-Lud 350 3 699 66 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_02_026800545 chr17:41894161-41919082 Sample_02_0268 Kidney A-498 545 6 652 61 0 127 1283 ACLY,KLHL11,CNP,TTC25
SE_03_000800490 chr17:41894183-41921131 Sample_03_0008 Lung A549_dexamethasone_7h 490 2 701 65 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_01_000600226 chr17:41894201-41920815 Sample_01_0006 Lung A549_ethanol_1h 226 2 692 65 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_03_001000394 chr17:41894282-41920859 Sample_03_0010 Lung A549_dexamethasone_1h 394 2 692 65 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_02_011001024 chr17:41894318-41920550 Sample_02_0110 Ovaries IOE11 1024 2 685 64 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_02_042900519 chr17:41894385-41916835 Sample_02_0429 Kidney 12364284_VHL+ 519 8 593 55 0 109 1184 ACLY,KLHL11,CNP,TTC25
SE_02_076301162 chr17:41894390-41926260 Sample_02_0763 Podocyte podocyte_DEX 1162 4 799 68 0 145 1335 ACLY,CNP,TTC25,KLHL11
SE_01_001200230 chr17:41894395-41920783 Sample_01_0012 Lung A549_dexamethasone_1h 230 2 689 65 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_02_031600627 chr17:41894587-41920632 Sample_02_0316 Neuroblastoma CHP212 627 3 680 64 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_02_029500120 chr17:41894631-41919080 Sample_02_0295 Lung A549_TGFBeta_72h 120 3 643 61 0 127 1283 ACLY,KLHL11,CNP,TTC25
SE_02_019400224 chr17:41894651-41920365 Sample_02_0194 Kidney Patient_x750T 224 3 675 64 0 137 1335 ACLY,KLHL11,CNP,TTC25
SE_02_066300282 chr17:41894751-41924091 Sample_02_0663 Thyroid TT 282 17 741 67 0 144 1335 ACLY,CNP,TTC25,KLHL11
SE_04_000900413 chr17:41894773-41921103 Sample_04_0009 Lung A549 413 3 687 65 0 137 1335 ACLY,CNP,TTC25,KLHL11
SE_02_137700991 chr17:41894783-41915679 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 991 11 549 48 0 105 1184 ACLY,TTC25,KLHL11
SE_03_000500571 chr17:41894922-41916589 Sample_03_0005 Lung A549_dexamethasone_0.5h 571 2 570 51 0 109 1184 ACLY,KLHL11,CNP,TTC25
SE_02_001000783 chr17:41894930-41917281 Sample_02_0010 Kidney A-498_emptyvector 783 2 592 56 0 109 1184 ACLY,KLHL11,CNP,TTC25
SE_02_076600558 chr17:41895013-41922386 Sample_02_0766 Ovary PEO1 558 14 707 66 0 135 1335 ACLY,CNP,TTC25,KLHL11
SE_02_119700760 chr17:41895195-41919766 Sample_02_1197 Brain GBM33 760 8 648 63 0 130 1335 ACLY,CNP,TTC25,KLHL11
SE_02_045201103 chr17:41895218-41919005 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 1103 9 627 60 0 120 1260 ACLY,CNP,TTC25,KLHL11
SE_02_157900592 chr17:41895318-41919067 Sample_02_1579 Renal 786-M1A 592 4 625 60 0 125 1278 ACLY,CNP,TTC25,KLHL11
SE_02_088601395 chr17:41895352-41920083 Sample_02_0886 Skin foreskin_ p63KLF4 1395 6 651 63 0 135 1335 ACLY,CNP,TTC25,KLHL11
SE_04_000400202 chr17:41895428-41916132 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 202 5 543 47 0 106 1184 ACLY,TTC25,KLHL11
SE_02_119301190 chr17:41895445-41919813 Sample_02_1193 Brain GBM27 1190 5 644 63 0 129 1335 ACLY,CNP,TTC25,KLHL11
SE_02_075300700 chr17:41895449-41919138 Sample_02_0753 Embryo ES-derived progenitors_FG type 700 4 626 60 0 124 1302 ACLY,CNP,TTC25,KLHL11
SE_02_121200609 chr17:41896053-41919848 Sample_02_1212 Brain GBM30 609 6 618 61 0 128 1335 ACLY,CNP,TTC25,KLHL11
SE_03_001300447 chr17:41904046-41920925 Sample_03_0013 Lung A549 447 1 421 44 0 109 998 ACLY,KLHL11,CNP,TTC25
SE_02_031200555 chr17:41904072-41923864 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 555 1 477 46 0 116 998 ACLY,KLHL11,CNP,TTC25
SE_02_004700476 chr17:41904206-41920480 Sample_02_0047 Pancreatic endoderm IIDP/donor790 476 1 411 43 0 109 998 ACLY,KLHL11,CNP,TTC25
SE_02_003300953 chr17:41904250-41920534 Sample_02_0033 Pancreas pancreatic-islets-F 953 1 412 43 0 109 998 ACLY,KLHL11,CNP,TTC25
SE_03_001400321 chr17:41904390-41920658 Sample_03_0014 Lung A549_dexamethasone_2h 321 1 409 40 0 109 998 ACLY,KLHL11,CNP,TTC25
SE_03_000900588 chr17:41904404-41921027 Sample_03_0009 Lung A549_dexamethasone_3h 588 1 419 41 0 109 998 ACLY,KLHL11,CNP,TTC25
SE_03_001500467 chr17:41904664-41921056 Sample_03_0015 Lung A549_dexamethasone_8h 467 1 415 40 0 109 973 ACLY,KLHL11,CNP,TTC25
SE_03_000700407 chr17:41905090-41921056 Sample_03_0007 Lung A549_dexamethasone_12h 407 2 407 40 0 107 926 ACLY,KLHL11,CNP,TTC25
SE_02_031000637 chr17:41905323-41920500 Sample_02_0310 Neuroblastoma SJNB8 637 3 388 37 0 107 926 ACLY,KLHL11,CNP,TTC25
SE_03_001100416 chr17:41905350-41920997 Sample_03_0011 Lung A549_dexamethasone_5h 416 2 397 38 0 107 919 ACLY,KLHL11,CNP,TTC25
SE_00_002300629 chr17:41906174-41911933 Sample_00_0023 Embryo mesenchymal-stem-cell 629 1 159 12 0 52 504 ACLY,KLHL11,TTC25
SE_04_000300183 chr17:41906380-41916331 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 183 4 250 22 0 74 674 ACLY,TTC25,KLHL11
SE_02_005000176 chr17:41909626-41919174 Sample_02_0050 Skin BJ 176 7 241 25 0 61 444 ACLY,KLHL11,CNP,TTC25
SE_02_055300415 chr17:41914584-41939870 Sample_02_0553 Other HSSY2 shCt 415 6 598 48 0 99 716 TTC25,ACLY,CNP,KLHL11
SE_02_082601558 chr17:41914835-41932922 Sample_02_0826 Stomach gastric tumor 1558 6 416 36 0 57 239 TTC25,ACLY,CNP,KLHL11
SE_01_010100882 chr17:41937214-41982683 Sample_01_0101 Pancreas pancreas_54y 882 10 1044 95 0 123 1931 TTC25,DNAJC7,CNP,ACLY,NKIRAS2
SE_02_104602142 chr17:41937966-41974975 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2142 9 845 82 0 89 1352 TTC25,CNP,DNAJC7,ACLY,NKIRAS2
SE_02_119301112 chr17:41959137-42004390 Sample_02_1193 Brain GBM27 1112 10 1096 81 1 197 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_120400238 chr17:41959246-42009934 Sample_02_1204 Brain NB2 238 22 1223 87 1 209 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_117800335 chr17:41959302-41977629 Sample_02_1178 Brain GBM07 335 6 471 38 0 78 1441 TTC25,DNAJC7,CNP,ACLY,NKIRAS2
SE_02_096300465 chr17:41959304-42005386 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 465 9 1116 82 1 202 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_119600355 chr17:41959339-42010089 Sample_02_1196 Brain GBM32 355 19 1225 87 1 209 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_121300210 chr17:41959370-42010048 Sample_02_1213 Brain GBM31 210 21 1224 87 1 209 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_096900400 chr17:41959379-42003629 Sample_02_0969 Brain H3.3K27M_PL637 400 12 1080 79 1 197 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_123500637 chr17:41959383-41974991 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 637 5 408 31 0 60 1030 TTC25,CNP,DNAJC7,ACLY,NKIRAS2
SE_02_119800278 chr17:41959387-42008983 Sample_02_1198 Brain GBM34 278 21 1195 85 1 207 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_100500168 chr17:41959435-41974871 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 168 7 402 31 0 58 990 TTC25,CNP,DNAJC7,ACLY,NKIRAS2
SE_02_117300156 chr17:41959441-42010190 Sample_02_1173 Brain GBM01 156 26 1224 86 1 209 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_120000992 chr17:41959477-42004355 Sample_02_1200 Brain GBM36 992 12 1087 80 1 197 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_098200504 chr17:41959534-41975920 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 504 6 421 34 0 69 1186 TTC25,CNP,DNAJC7,ACLY,NKIRAS2
SE_02_121200276 chr17:41959538-41977314 Sample_02_1212 Brain GBM30 276 5 455 36 0 76 1402 TTC25,DNAJC7,CNP,ACLY,NKIRAS2
SE_02_095500459 chr17:41959552-41982536 Sample_02_0955 Brain IDH1_2469 459 7 576 44 0 93 1593 TTC25,DNAJC7,CNP,ACLY,NKIRAS2
SE_02_101300260 chr17:41959589-41987971 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 260 14 682 47 0 120 1710 TTC25,DNAJC7,CNP,ACLY,NKIRAS2
SE_02_120300267 chr17:41959858-42009975 Sample_02_1203 Brain NB1 267 20 1205 86 1 209 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_118900450 chr17:41959888-41976648 Sample_02_1189 Brain GBM22 450 10 428 34 0 70 1309 TTC25,DNAJC7,CNP,ACLY,NKIRAS2
SE_02_074000731 chr17:41959905-41994101 Sample_02_0740 Muscle RH3 731 4 818 61 0 162 1911 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_100000073 chr17:41960479-42002545 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 73 14 1017 76 0 191 2122 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_120500277 chr17:41962682-42010067 Sample_02_1205 Brain NB3 277 29 1121 79 1 209 2038 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_121100246 chr17:41962713-42004838 Sample_02_1211 Brain GBM21 246 14 999 74 1 197 2038 TTC25,DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C
SE_02_104801395 chr17:41962764-41978362 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1395 5 374 30 0 79 1391 TTC25,DNAJC7,CNP,ACLY,NKIRAS2
SE_02_098900981 chr17:41965040-41979155 Sample_02_0989 Kidney kidney cortex_WT 981 1 334 24 0 79 1360 TTC25,DNAJC7,CNP,ACLY,NKIRAS2
SE_02_035000387 chr17:41965695-41976443 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 387 3 262 20 0 67 1089 CNP,DNAJC7,NKIRAS2,TTC25,ACLY
SE_02_120200559 chr17:41965755-42004458 Sample_02_1202 Brain GBM38 559 11 916 65 1 195 1921 DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C,TTC25
SE_02_080800139 chr17:41966797-42026603 Sample_02_0808 Ovary RMG1_ARID1A KO 139 24 1447 83 1 320 2942 DNAJC7,NKIRAS2,ZNF385C,CNP,ACLY,TTC25
SE_02_100900136 chr17:41968207-42003520 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 136 14 849 61 1 174 1691 DNAJC7,CNP,ACLY,NKIRAS2,ZNF385C,TTC25
SE_02_122400382 chr17:41969278-42024715 Sample_02_1224 Bone marrow normal plasma cell 382 33 1347 79 1 276 2332 DNAJC7,NKIRAS2,CNP,ZNF385C,TTC25
SE_02_101000144 chr17:41969311-41975617 Sample_02_1010 Brain Lateral temporal lobe_3T_AD 144 2 164 12 0 32 572 CNP,DNAJC7,NKIRAS2,TTC25
SE_02_129700461 chr17:41969373-42025482 Sample_02_1297 Lung lung 461 12 1361 80 1 282 2452 DNAJC7,NKIRAS2,CNP,ZNF385C,TTC25
SE_01_005400541 chr17:41972036-41997805 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 541 5 615 40 0 140 1446 CNP,DNAJC7,NKIRAS2,TTC25,ACLY
SE_01_008501226 chr17:41972270-42026069 Sample_01_0085 Stomach stomach 1226 6 1316 75 1 282 2460 CNP,NKIRAS2,DNAJC7,TTC25,ACLY
SE_02_067200535 chr17:41972545-42025675 Sample_02_0672 Endometrium endometrium cancer_DSG 535 17 1297 75 1 281 2383 DNAJC7,NKIRAS2,ZNF385C,CNP,TTC25
SE_02_101700465 chr17:41973952-42029945 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 465 9 1362 76 1 311 2961 DNAJC7,NKIRAS2,ZNF385C,CNP,TTC25
SE_02_141000908 chr17:41974366-42025488 Sample_02_1410 Brain GSC6 908 10 1222 70 1 261 2124 DNAJC7,NKIRAS2,CNP,ZNF385C,TTC25
SE_02_045200488 chr17:41974832-42025679 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 488 11 1218 70 1 265 2068 DNAJC7,NKIRAS2,ZNF385C,CNP,TTC25
Genomic distribution of SEs associated with TTC25
Genome Browser

The strength of the tissue affected by the gene

Expression of TTC25

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)