SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000167094
Gene: TTC16 Gene type: protein_coding
Strand: + External links:
Genomic region: chr9:127716079-127731590 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077600253 chr9:127606479-127668667 Sample_02_0776 Pancreas EndoC-BH1 253 15 1538 97 1 107 740 STXBP1,PTRH1,FAM129B,MIR3911,TTC16,C9ORF117
SE_02_108300057 chr9:127606592-127700455 Sample_02_1083 Macula macula 57 32 2308 133 2 181 1855 MIR3911,STXBP1,TTC16,TOR2A,PTRH1,FAM129B,C9ORF117
SE_02_108200062 chr9:127606662-127700478 Sample_02_1082 Retina retina 62 40 2307 133 2 181 1855 MIR3911,STXBP1,TTC16,TOR2A,PTRH1,FAM129B,C9ORF117
SE_02_021100747 chr9:127640888-127668091 Sample_02_0211 Lung MRC-5_NFD_1DPT 747 7 688 39 1 55 519 STXBP1,PTRH1,C9ORF117,MIR3911,TTC16
SE_02_046200153 chr9:127641401-127677338 Sample_02_0462 Lung NCI-H2171 cells 153 12 878 48 1 87 874 STXBP1,PTRH1,TTC16,C9ORF117,MIR3911
SE_02_030000332 chr9:127643907-127668857 Sample_02_0300 Neuroblastoma CLB-PE 332 2 630 36 1 57 565 STXBP1,PTRH1,C9ORF117,MIR3911,TTC16
SE_02_106400285 chr9:127658271-127666726 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 285 4 213 11 1 40 374 STXBP1,PTRH1,TTC16,C9ORF117,MIR3911
SE_02_128600097 chr9:127658381-127687205 Sample_02_1286 Lung NCI-H378_p8-15 97 7 714 35 1 102 1034 STXBP1,TOR2A,PTRH1,MIR3911,TTC16,C9ORF117
SE_02_110400621 chr9:127658455-127668377 Sample_02_1104 Brain NB-69 621 3 258 15 1 41 425 STXBP1,PTRH1,TTC16,C9ORF117,MIR3911
SE_02_120500529 chr9:127660469-127704198 Sample_02_1205 Brain NB3 529 31 1061 52 1 115 1461 MIR3911,STXBP1,TOR2A,PTRH1,TTC16,C9ORF117
SE_02_030400445 chr9:127740254-127781118 Sample_02_0304 Neuroblastoma N206 445 7 1036 92 2 250 1897 SH2D3C,CDK9,PTRH1,FPGS,MIR3911,MIR2861,TTC16,C9ORF117,TOR2A
SE_02_077501029 chr9:127740641-127744728 Sample_02_0775 Pancreas EndoC-BH1_SE 1029 1 87 9 1 35 309 SH2D3C,CDK9,TTC16,TOR2A,PTRH1,MIR3911,MIR2861,MIR3960,C9ORF117
SE_00_003900057 chr9:127752901-127804631 Sample_00_0039 Spleen spleen_3y 57 8 1404 124 2 281 2528 MIR2861,SH2D3C,CDK9,FPGS,PTRH1,TTC16,C9ORF117,TOR2A
SE_01_009000423 chr9:127753029-127772346 Sample_01_0090 Lung upper-lobe-of-left-lung 423 1 488 50 1 107 758 SH2D3C,CDK9,PTRH1,FPGS,MIR2861,TTC16,C9ORF117,TOR2A
SE_00_004000039 chr9:127753481-127810381 Sample_00_0040 Spleen spleen_30y 39 16 1552 132 2 280 3280 MIR2861,SH2D3C,CDK9,FPGS,PTRH1,TTC16,C9ORF117,ENG,TOR2A
SE_00_000300354 chr9:127754293-127809933 Sample_00_0003 Adrenal gland adrenal-gland_97d 354 9 1516 129 2 270 3180 MIR2861,SH2D3C,CDK9,FPGS,PTRH1,TTC16,C9ORF117,ENG,TOR2A
SE_02_090900727 chr9:127758183-127784018 Sample_02_0909 Heart left ventricle_DCM_LV1264 727 10 653 51 1 115 831 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_091700661 chr9:127758310-127784165 Sample_02_0917 Heart left ventricle_DCM_LV1433 661 6 654 51 1 115 831 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_091800366 chr9:127758340-127784339 Sample_02_0918 Heart left ventricle_DCM_LV1437 366 8 657 51 1 115 831 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_091400724 chr9:127758542-127770011 Sample_02_0914 Heart left ventricle_DCM_LV1342 724 7 292 28 1 49 396 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_055700065 chr9:127758764-127777538 Sample_02_0557 iPSCs WT hiPSC#1 65 3 476 45 1 78 711 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_089500553 chr9:127758784-127771340 Sample_02_0895 Heart left ventricle_LV1259 553 4 326 36 1 66 477 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_152000185 chr9:127759422-127769660 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 185 5 254 26 1 48 396 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960,ENG
SE_02_002700206 chr9:127759991-127771612 Sample_02_0027 Umbilical vein HUVEC_VEGF_4h 206 1 297 35 1 68 539 SH2D3C,CDK9,PTRH1,FPGS,MIR2861,TTC16,TOR2A
SE_02_090600774 chr9:127759993-127771485 Sample_02_0906 Heart left ventricle_DCM_LV1072 774 1 291 35 1 68 512 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_147100322 chr9:127760884-127771391 Sample_02_1471 Blood Outgrowth Endothelia BOEC 322 1 276 33 1 68 486 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_058500863 chr9:127760890-127765777 Sample_02_0585 Umbilical vein HUVEC 0hour 863 1 132 17 1 21 250 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960,ENG
SE_02_095001261 chr9:127760929-127765731 Sample_02_0950 Umbilical vein HUVEC_WT 1261 1 129 17 1 21 250 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960,ENG
SE_02_083100548 chr9:127761033-127765775 Sample_02_0831 Umblical vein HUVECs_TNF0min 548 1 130 17 1 21 250 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960,ENG
SE_02_130800573 chr9:127761095-127784017 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 573 4 591 48 1 115 831 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_130900724 chr9:127761148-127783937 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 724 4 588 48 1 115 831 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_00_001100538 chr9:127761164-127810865 Sample_00_0011 Esophagus esophagus 538 11 1388 119 2 243 3078 MIR2861,SH2D3C,CDK9,FPGS,PTRH1,TTC16,ENG,TOR2A
SE_02_083200756 chr9:127761232-127765388 Sample_02_0832 Umblical vein HUVECs_TNF30min 756 1 116 15 1 18 250 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960,ENG
SE_00_003500486 chr9:127761336-127810809 Sample_00_0035 Sigmoid colon sigmoid-colon 486 11 1380 119 2 241 3072 MIR2861,SH2D3C,CDK9,FPGS,PTRH1,TTC16,ENG,TOR2A
SE_00_004200381 chr9:127761566-127804526 Sample_00_0042 Stomach stomach_30y 381 10 1188 108 2 239 2259 MIR2861,SH2D3C,CDK9,FPGS,PTRH1,TTC16,TOR2A
SE_00_000600114 chr9:127761696-127787212 Sample_00_0006 Blood CD14-positive-monocyte 114 4 658 48 1 185 1136 MIR2861,SH2D3C,CDK9,PTRH1,FPGS,TTC16,TOR2A
SE_02_090801431 chr9:127762533-127771455 Sample_02_0908 Heart left ventricle_DCM_LV1262 1431 1 234 30 1 64 274 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_089000949 chr9:127762550-127771427 Sample_02_0890 Heart left ventricle_LV1200 949 1 233 30 1 64 267 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_091900963 chr9:127762572-127771314 Sample_02_0919 Heart left ventricle_DCM_LV1532 963 1 231 30 1 62 229 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_084001177 chr9:127763515-127776844 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1177 5 338 35 1 70 461 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_055600115 chr9:127763606-127771170 Sample_02_0556 iPSCs BOFS hiPSC cl1 115 2 197 26 1 53 175 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_002200142 chr9:127763707-127804217 Sample_02_0022 Blood CD8donorA 142 16 1115 100 2 235 1971 MIR2861,SH2D3C,CDK9,FPGS,PTRH1,TTC16,TOR2A
SE_02_146900356 chr9:127763715-127771805 Sample_02_1469 Umbilical Vein HUVEC 356 1 213 26 1 61 289 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960,ENG
SE_00_000800242 chr9:127763756-127788554 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 242 2 654 44 1 195 1158 SH2D3C,MIR2861,CDK9,PTRH1,FPGS,TTC16,TOR2A
SE_02_062000579 chr9:127764049-127784060 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 579 7 514 39 1 98 581 SH2D3C,CDK9,TTC16,TOR2A,FPGS,PTRH1,MIR2861,MIR3960
SE_02_002400303 chr9:127765074-127784065 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 303 11 482 33 0 95 581 SH2D3C,CDK9,PTRH1,FPGS,MIR2861,TTC16,TOR2A
SE_00_000900408 chr9:127765823-127804543 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 408 4 1073 91 1 222 2037 MIR2861,SH2D3C,CDK9,FPGS,TTC16,TOR2A
SE_02_095000922 chr9:127765947-127771344 Sample_02_0950 Umbilical vein HUVEC_WT 922 1 142 16 0 44 228 SH2D3C,CDK9,TTC16,TOR2A,FPGS,MIR2861,MIR3960
SE_02_058500459 chr9:127766011-127771365 Sample_02_0585 Umbilical vein HUVEC 0hour 459 1 139 16 0 41 229 SH2D3C,CDK9,TTC16,TOR2A,FPGS,MIR2861,MIR3960
SE_02_083200272 chr9:127766062-127771337 Sample_02_0832 Umblical vein HUVECs_TNF30min 272 1 138 16 0 40 227 SH2D3C,CDK9,TTC16,TOR2A,FPGS,MIR2861,MIR3960
SE_02_083100335 chr9:127766062-127771343 Sample_02_0831 Umblical vein HUVECs_TNF0min 335 1 138 16 0 40 228 SH2D3C,CDK9,TTC16,TOR2A,FPGS,MIR2861,MIR3960
Genomic distribution of SEs associated with TTC16
Genome Browser

The strength of the tissue affected by the gene

Expression of TTC16

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)