SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000100300
Gene: TSPO Gene type: protein_coding
Strand: + External links:
Genomic region: chr22:43151547-43163242 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600538 chr22:43017345-43101576 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 538 26 2762 296 5 53 1336 LOC100506679,TTLL1,MCAT,TSPO,PACSIN2,BIK
SE_02_023700435 chr22:43067079-43130779 Sample_02_0237 Colon V389 435 19 2124 218 9 52 1157 BIK,TTLL1,TSPO,MCAT
SE_02_077501341 chr22:43074019-43131423 Sample_02_0775 Pancreas EndoC-BH1_SE 1341 24 1910 191 9 40 917 BIK,TTLL1,MCAT,LOC100506679,TSPO
SE_02_092300873 chr22:43076611-43104531 Sample_02_0923 Heart fetal heart_PCW10_12522 873 7 952 89 4 15 205 TTLL1,MCAT,LOC100506679,TSPO,BIK
SE_02_092201093 chr22:43076804-43103767 Sample_02_0922 Heart fetal heart_PCW10_12434 1093 7 909 84 3 15 205 TTLL1,MCAT,LOC100506679,TSPO,BIK
SE_02_024200214 chr22:43076972-43130831 Sample_02_0242 Colon V481 214 8 1766 178 9 37 848 BIK,TTLL1,TSPO,MCAT
SE_02_092101065 chr22:43076975-43104668 Sample_02_0921 Heart embryonic heart_CS22 1065 10 932 89 4 15 205 TTLL1,MCAT,LOC100506679,TSPO,BIK
SE_02_074700436 chr22:43077147-43136221 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 436 21 1967 197 10 52 1155 MCAT,BIK,TTLL1,LOC100506679,TSPO
SE_02_047700400 chr22:43078807-43132650 Sample_02_0477 Colon intestinal epithelial organoids_139a 400 15 1756 175 9 38 966 MCAT,BIK,TTLL1,LOC100506679,TSPO
SE_02_047800455 chr22:43078857-43132761 Sample_02_0478 Colon normal colon mucosa 455 18 1755 175 9 38 985 MCAT,BIK,TTLL1,LOC100506679,TSPO
SE_02_074601277 chr22:43085420-43104900 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1277 7 636 59 4 15 130 TTLL1,MCAT,LOC100506679,TSPO,BIK
SE_02_074501412 chr22:43086283-43104973 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1412 4 606 58 4 15 130 TTLL1,MCAT,LOC100506679,TSPO,BIK
SE_02_033500247 chr22:43090471-43149403 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 247 10 1959 183 10 63 1312 BIK,MCAT,TSPO,TTLL12,TTLL1
SE_02_033300429 chr22:43090885-43131408 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 429 6 1318 138 9 32 643 BIK,TSPO,TTLL1,MCAT
SE_02_099500312 chr22:43091333-43149110 Sample_02_0995 Blood MOLM-13_empty vector 312 24 1921 180 10 63 1312 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_02_033100408 chr22:43091474-43148335 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 408 8 1881 176 10 63 1312 BIK,MCAT,TSPO,TTLL12,TTLL1
SE_02_134000722 chr22:43091664-43149216 Sample_02_1340 Blood acute myeloid leukemia 722 20 1909 180 10 63 1312 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_02_012800554 chr22:43091725-43148988 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 554 19 1904 179 10 63 1312 BIK,MCAT,TSPO,TTLL12,TTLL1
SE_02_109800151 chr22:43091992-43148942 Sample_02_1098 Blood THP1_DMSO_noPMA 151 16 1898 178 10 63 1312 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_02_133100144 chr22:43092017-43148942 Sample_02_1331 Blood Molm13_CTRL 144 18 1898 178 10 63 1312 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_02_046100630 chr22:43092528-43149086 Sample_02_0461 Blood MV-4-11-B cells 630 17 1890 178 10 63 1312 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_02_020200053 chr22:43098069-43130376 Sample_02_0202 Stomach YCC7 53 7 1047 114 9 32 643 BIK,TSPO,TTLL1,MCAT
SE_02_132300264 chr22:43098492-43131609 Sample_02_1323 Colon DLD1_WT 264 6 1068 116 9 32 643 BIK,TTLL1,MCAT,TSPO
SE_02_035400906 chr22:43099884-43130583 Sample_02_0354 Colon Colo205 906 7 1000 111 8 32 643 BIK,TSPO,TTLL1,MCAT
SE_02_070900566 chr22:43100605-43130055 Sample_02_0709 Pancreas hT85_organoid 566 10 966 107 8 32 643 BIK,TTLL1,MCAT,TSPO
SE_02_034500381 chr22:43102958-43130449 Sample_02_0345 Blood AML8 381 5 877 98 6 22 643 BIK,TSPO,TTLL1,MCAT
SE_00_004200169 chr22:43103628-43160935 Sample_00_0042 Stomach stomach_30y 169 10 1858 180 8 67 1777 BIK,TSPO,MCAT,TTLL12,TTLL1
SE_02_066900904 chr22:43103660-43116548 Sample_02_0669 Prostate prostate cancer_DSG 904 4 409 43 3 12 117 BIK,TTLL1,MCAT,TSPO
SE_02_061701078 chr22:43103663-43149094 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1078 6 1501 140 7 53 1312 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_02_104100120 chr22:43104404-43129897 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 120 10 823 86 5 22 638 BIK,TTLL1,MCAT,TSPO
SE_02_088500761 chr22:43104420-43131125 Sample_02_0885 Blood NALM6_2 761 4 847 90 5 22 643 BIK,TTLL1,MCAT,TSPO
SE_01_005500252 chr22:43109988-43148584 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 252 4 1271 115 6 48 1312 BIK,MCAT,TSPO,TTLL12,TTLL1
SE_02_077900263 chr22:43110129-43149468 Sample_02_0779 Lymphoma U2932 263 16 1303 118 6 48 1312 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_00_003500148 chr22:43110717-43161013 Sample_00_0035 Sigmoid colon sigmoid-colon 148 11 1633 156 7 61 1738 BIK,TSPO,MCAT,TTLL12,TTLL1
SE_02_121800695 chr22:43112625-43149190 Sample_02_1218 Bone marrow Daudi 695 14 1225 112 6 46 1195 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_02_081900808 chr22:43113006-43130413 Sample_02_0819 Ovary Mucinous ovarian cancer 808 4 572 65 5 15 526 BIK,TTLL1,MCAT,TSPO
SE_02_050100451 chr22:43113284-43130188 Sample_02_0501 Blood HL-60_CTRL 451 4 559 65 5 15 526 BIK,TTLL1,MCAT,TSPO
SE_02_025600364 chr22:43114470-43164356 Sample_02_0256 Peripheral blood MV411 364 14 1648 157 5 79 1943 BIK,TSPO,MCAT,TTLL12,TTLL1
SE_02_094801077 chr22:43114808-43129195 Sample_02_0948 Pharyng Detroit562 1077 2 467 55 3 7 389 BIK,TTLL1,MCAT,TSPO
SE_02_057300522 chr22:43114810-43148246 Sample_02_0573 Blood Nalm6_1 522 8 1115 97 4 41 1195 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_02_113100495 chr22:43118775-43130777 Sample_02_1131 Pancreas T3M4 wt 495 5 394 46 3 10 526 BIK,TTLL1,MCAT,TSPO
SE_02_103000511 chr22:43123765-43132145 Sample_02_1030 Colon DKO 511 1 307 21 1 10 543 BIK,TTLL1,MCAT,TSPO
SE_02_125400707 chr22:43124364-43129291 Sample_02_1254 Bladder Bladder tumor Basal1 707 2 188 13 1 8 296 BIK,TTLL1,MCAT,TSPO
SE_02_020800323 chr22:43125005-43130350 Sample_02_0208 Stomach YCC3 323 3 200 13 1 9 415 BIK,TSPO,TTLL1,MCAT
SE_02_094600847 chr22:43125354-43129283 Sample_02_0946 Tongue HN12 847 1 160 12 1 8 295 BIK,TTLL1,MCAT,TSPO
SE_02_154000637 chr22:43125470-43129199 Sample_02_1540 Nasopharyngeal HK1 637 1 143 12 1 6 279 BIK,TTLL1,MCAT,TSPO
SE_02_064601262 chr22:43125733-43128584 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1262 2 100 11 1 5 181 BIK,TTLL1,MCAT,TSPO
SE_02_064501716 chr22:43125750-43129597 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1716 1 154 12 1 8 344 BIK,TTLL1,MCAT,TSPO
SE_02_064401163 chr22:43126286-43129925 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 1163 4 142 11 1 9 415 BIK,TTLL1,MCAT,TSPO
SE_02_129200428 chr22:43127362-43130273 Sample_02_1292 Lung JHU-LX110-SCLC PDX 428 2 115 9 1 8 415 BIK,TTLL1,MCAT,TSPO
SE_02_010000701 chr22:43127632-43164100 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 701 6 1219 106 2 77 1799 BIK,TSPO,MCAT,TTLL12,TTLL1
SE_02_143001003 chr22:43135948-43147658 Sample_02_1430 Blood Kasumi-3_mock-infected 1003 3 374 17 0 16 362 MCAT,BIK,TTLL1,TSPO,TTLL12
SE_01_008501309 chr22:43145651-43184563 Sample_01_0085 Stomach stomach 1309 7 1494 184 5 146 2588 TTLL12,TSPO,BIK,MCAT
SE_02_039600193 chr22:43148500-43303685 Sample_02_0396 Skin NHEK-D 193 40 5573 626 20 508 6372 SCUBE1,TTLL12,TSPO,BIK,MCAT
SE_02_101701766 chr22:43168269-43235512 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1766 11 2451 379 9 240 4022 TTLL12,SCUBE1,TSPO,MCAT
SE_02_103000379 chr22:43179857-43187096 Sample_02_1030 Colon DKO 379 1 267 55 3 34 415 TTLL12,TSPO,MCAT
SE_02_102900592 chr22:43180744-43250163 Sample_02_1029 Colon HCT116 592 45 2410 381 13 201 3099 TTLL12,SCUBE1,TSPO,MCAT
SE_02_110200025 chr22:43197466-43345865 Sample_02_1102 Brain LA-N-5 25 48 5099 430 20 534 3913 SCUBE1,TSPO,TTLL12
SE_02_104600093 chr22:43197486-43321657 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 93 48 4399 406 16 412 3603 SCUBE1,TSPO,TTLL12
SE_02_138500245 chr22:43197604-43312874 Sample_02_1385 Other iPSCs 245 51 4117 394 16 379 3508 SCUBE1,TSPO,TTLL12
SE_02_110000040 chr22:43198333-43346133 Sample_02_1100 Brain COG-N-415 40 44 5061 424 20 534 3738 SCUBE1,TSPO,TTLL12
SE_02_110500127 chr22:43198414-43329331 Sample_02_1105 Brain NBL-S 127 52 4570 407 18 453 3417 SCUBE1,TSPO,TTLL12
SE_02_110100043 chr22:43198594-43346516 Sample_02_1101 Brain KELLY 43 60 5065 423 20 534 3684 SCUBE1,TSPO,TTLL12
SE_02_087400265 chr22:43199546-43232341 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 265 8 1183 182 6 136 1987 SCUBE1,TSPO,TTLL12
SE_02_087200490 chr22:43200325-43220771 Sample_02_0872 Colon HCT116_siCtrl-5FU 490 9 798 138 5 81 1263 SCUBE1,TSPO,TTLL12
SE_02_053900103 chr22:43201898-43303470 Sample_02_0539 Brain SK-N-BE_2_-C_GFP_control 103 62 3617 339 15 354 3204 SCUBE1,TSPO,TTLL12
Genomic distribution of SEs associated with TSPO
Genome Browser

The strength of the tissue affected by the gene

Expression of TSPO

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)