SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000129991
Gene: TNNI3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:55151767-55157773 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_055300197 chr19:55084259-55118921 Sample_02_0553 Other HSSY2 shCt 197 9 1103 59 0 167 2878 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_104700880 chr19:55084440-55120255 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 880 15 1140 61 0 168 2841 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_104901306 chr19:55084474-55115632 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1306 21 1019 54 0 138 2606 PPP1R12C,EPS8L1,RDH13,TNNI3,GP6,MIR7975,TNNT1
SE_02_155300584 chr19:55086330-55118429 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 584 7 1030 57 0 144 2612 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_103602072 chr19:55086336-55112718 Sample_02_1036 Mammary gland HCC70_XY018 2072 8 881 45 0 103 2165 PPP1R12C,EPS8L1,RDH13,TNNI3,GP6,MIR7975,TNNT1
SE_02_111100512 chr19:55086377-55118775 Sample_02_1111 Other HGrC1_SMAD2/3KO 512 12 1037 57 0 147 2605 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_01_007700494 chr19:55086485-55119240 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 494 4 1042 58 0 147 2571 EPS8L1,PPP1R12C,GP6,RDH13,TNNI3,C19ORF51,TNNT1
SE_01_007500995 chr19:55086537-55119220 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 995 3 1040 58 0 145 2555 EPS8L1,PPP1R12C,GP6,RDH13,TNNI3,C19ORF51,TNNT1
SE_01_009200624 chr19:55086540-55119277 Sample_01_0092 Vagina vagina 624 3 1041 58 0 145 2555 EPS8L1,PPP1R12C,GP6,RDH13,TNNI3,C19ORF51,TNNT1
SE_01_007400600 chr19:55086575-55119158 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 600 3 1037 58 0 145 2547 EPS8L1,PPP1R12C,GP6,RDH13,TNNI3,C19ORF51,TNNT1
SE_02_089201202 chr19:55086705-55117496 Sample_02_0892 Heart left ventricle_LV1215 1202 8 992 55 0 123 2406 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_00_004600859 chr19:55086718-55115469 Sample_00_0046 Heart right ventricle_34y 859 10 946 52 0 113 2278 PPP1R12C,EPS8L1,RDH13,TNNI3,GP6,MIR7975,TNNT1,PTPRH
SE_02_089000980 chr19:55086734-55117635 Sample_02_0890 Heart left ventricle_LV1200 980 8 992 55 0 130 2452 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_01_009800777 chr19:55086755-55117646 Sample_01_0098 Heart left ventricle_51y 777 6 991 55 0 129 2454 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_089601230 chr19:55086788-55117313 Sample_02_0896 Heart left ventricle_LV1294 1230 7 987 55 0 114 2345 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_090601141 chr19:55086796-55117561 Sample_02_0906 Heart left ventricle_DCM_LV1072 1141 6 987 55 0 129 2409 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_088901445 chr19:55086825-55117397 Sample_02_0889 Heart left ventricle_LV1183 1445 6 985 55 0 114 2350 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_088801012 chr19:55086852-55119046 Sample_02_0888 Heart left ventricle_LV1160 1012 6 1026 58 0 139 2468 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_089100908 chr19:55087286-55117647 Sample_02_0891 Heart left ventricle_LV1202 908 6 973 55 0 126 2321 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_090200917 chr19:55087302-55117525 Sample_02_0902 Heart left ventricle_LV1558 917 3 972 55 0 122 2270 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_090001140 chr19:55087345-55117566 Sample_02_0900 Heart left ventricle_LV1452 1140 5 969 55 0 125 2276 PPP1R12C,EPS8L1,RDH13,DNAAF3,TNNI3,GP6,MIR7975,TNNT1
SE_02_090401262 chr19:55088112-55117337 Sample_02_0904 Heart left ventricle_DCM_LV1028 1262 5 932 53 0 102 2053 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,GP6,MIR7975,TNNT1
SE_01_007800814 chr19:55109682-55119346 Sample_01_0078 Heart left ventricle heart-left-ventricle 814 1 270 14 0 63 565 PPP1R12C,RDH13,EPS8L1,TNNI3,C19ORF51,TNNT1
SE_01_009100729 chr19:55110336-55119083 Sample_01_0091 Uterus uterus 729 1 242 14 0 62 565 PPP1R12C,RDH13,EPS8L1,TNNI3,C19ORF51,TNNT1
SE_02_155900551 chr19:55110459-55117714 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 551 2 204 11 0 56 546 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1
SE_01_008300753 chr19:55110516-55119026 Sample_01_0083 Sigmoid colon sigmoid-colon 753 1 238 14 0 62 565 PPP1R12C,RDH13,EPS8L1,TNNI3,C19ORF51,TNNT1
SE_02_156001100 chr19:55110575-55118763 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1100 1 231 13 0 62 565 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1
SE_01_010901011 chr19:55110937-55118577 Sample_01_0109 Colon transverse colon_54y 1011 2 215 12 0 60 565 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1,HSPBP1,PTPRH,SYT5,GP6,SUV420H2
SE_00_002100931 chr19:55111261-55119017 Sample_00_0021 Lung lung_3y 931 1 213 13 0 61 565 PPP1R12C,RDH13,EPS8L1,TNNI3,C19ORF51,TNNT1
SE_02_155800267 chr19:55111378-55117609 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 267 1 169 10 0 50 499 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1
SE_00_005200835 chr19:55111494-55117597 Sample_00_0052 Heart left ventricle 3y 835 4 166 10 0 50 495 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1
SE_02_121800730 chr19:55111823-55121253 Sample_02_1218 Bone marrow Daudi 730 2 264 16 1 62 565 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1
SE_02_147200601 chr19:55112303-55118459 Sample_02_1472 Fetal lung IMR-90 601 1 171 12 0 58 560 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1
SE_02_126401181 chr19:55112440-55118951 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1181 1 174 12 0 61 527 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1
SE_02_096201046 chr19:55112517-55118770 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 1046 2 168 12 0 58 504 PPP1R12C,RDH13,DNAAF3,TNNI3,EPS8L1,MIR7975,TNNT1
SE_02_077502415 chr19:55113157-55146600 Sample_02_0775 Pancreas EndoC-BH1_SE 2415 8 1111 69 1 81 1326 PPP1R12C,TNNT1,MIR7975,SYT5,RDH13,DNAAF3,TNNI3,EPS8L1
SE_02_067201118 chr19:55125969-55148289 Sample_02_0672 Endometrium endometrium cancer_DSG 1118 8 783 60 0 45 1285 TNNT1,PPP1R12C,SYT5,DNAAF3,TNNI3,EPS8L1,MIR7975
SE_02_067400987 chr19:55126266-55148042 Sample_02_0674 Endometrium E1_FA 987 6 758 53 0 39 1235 TNNT1,PPP1R12C,SYT5,DNAAF3,TNNI3,EPS8L1,MIR7975
SE_02_108000611 chr19:55146659-55151042 Sample_02_1080 Muscle JR1 shCtrl 611 1 165 15 0 14 424 TNNT1,PPP1R12C,SYT5,DNAAF3,TNNI3,MIR7975
SE_02_021600372 chr19:55172850-55212800 Sample_02_0216 Skin NHEK_scramble 372 7 1482 130 0 120 3699 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3,TNNT1
SE_02_125600097 chr19:55187378-55225466 Sample_02_1256 Pancreatic duct pancreatic ductal epithelium cell 97 9 1348 91 1 28 1758 PTPRH,SYT5,TMEM86B,DNAAF3,TNNI3,MIR6804,TNNT1,MIR6802,MIR6803,PPP6R1
SE_02_136500275 chr19:55188541-55225267 Sample_02_1365 Pancreas AsPC1-untreated 275 10 1286 81 1 25 1575 PTPRH,SYT5,TMEM86B,DNAAF3,TNNI3,MIR6804,TNNT1,MIR6802,MIR6803,PPP6R1
SE_01_003900422 chr19:55202036-55218195 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 422 4 623 36 0 18 583 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3,BRSK1,DNAAF3,HSPBP1,PPP1R12C,TE86B,TNNT1
SE_02_001500375 chr19:55203295-55232264 Sample_02_0015 Liver HepG2_shNS 375 5 1124 57 2 69 1804 PTPRH,TMEM86B,PPP6R1,SYT5,C19ORF51,HSPBP1,TNNI3
SE_02_020700108 chr19:55203354-55218179 Sample_02_0207 Stomach FU97 108 3 556 27 0 16 500 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3
SE_02_125800461 chr19:55203547-55218111 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 461 5 546 27 0 16 500 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_111100921 chr19:55204441-55230229 Sample_02_1111 Other HGrC1_SMAD2/3KO 921 8 931 52 2 42 1244 PTPRH,TMEM86B,PPP6R1,SYT5,HSPBP1,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803
SE_02_125700105 chr19:55205398-55226543 Sample_02_1257 Pancreas pancreatic cancer cells 105 3 704 39 1 15 398 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_061000778 chr19:55205447-55217422 Sample_02_0610 Liposarcoma MLS 1765-92 778 3 413 20 0 15 370 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_102900482 chr19:55205535-55223804 Sample_02_1029 Colon HCT116 482 7 602 32 0 14 344 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_070500704 chr19:55205558-55218150 Sample_02_0705 Pancreas AsPC1 WT 704 5 431 25 0 14 343 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_103501335 chr19:55205992-55227584 Sample_02_1035 Mammary gland HCC70_Vehicle 1335 5 743 44 2 23 567 PTPRH,TMEM86B,SYT5,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_103300380 chr19:55206114-55219047 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 380 3 435 27 0 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_001400347 chr19:55206137-55217577 Sample_02_0014 Liver HepG2_shBRG1 347 2 387 21 0 14 308 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3
SE_02_035300333 chr19:55206138-55217742 Sample_02_0353 Colon HT29 333 2 398 23 0 14 308 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3
SE_02_019900168 chr19:55206233-55217891 Sample_02_0199 Stomach KATO3 168 2 402 24 0 14 308 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3
SE_02_054500614 chr19:55206276-55218204 Sample_02_0545 Bone marrow K562 WT 614 2 411 25 0 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_136700362 chr19:55206296-55218010 Sample_02_1367 Pancreas Capan1-untreated 362 5 406 25 0 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_113100726 chr19:55206301-55217405 Sample_02_1131 Pancreas T3M4 wt 726 4 382 20 0 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_070400535 chr19:55206329-55217081 Sample_02_0704 Pancreas HPAFII WT 535 3 373 18 0 10 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_127700242 chr19:55206337-55217049 Sample_02_1277 Prostate PC3_COMBO 242 8 372 18 0 10 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_136600727 chr19:55206360-55217159 Sample_02_1366 Pancreas BxPC3-untreated 727 3 375 18 0 12 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_00_004900477 chr19:55206362-55217152 Sample_00_0049 Small intestine small intestine 30y 477 3 375 18 0 10 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_125400738 chr19:55206372-55217361 Sample_02_1254 Bladder Bladder tumor Basal1 738 4 378 19 0 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_154000495 chr19:55206372-55217426 Sample_02_1540 Nasopharyngeal HK1 495 5 381 20 0 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_123000077 chr19:55206390-55217648 Sample_02_1230 Lung PC9 77 4 389 22 0 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_001100764 chr19:55206391-55218180 Sample_02_0011 Kidney A-498_wtVHL 764 2 408 25 0 14 308 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3
SE_02_061500742 chr19:55206391-55225195 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 742 4 616 36 1 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_047700720 chr19:55206444-55217388 Sample_02_0477 Colon intestinal epithelial organoids_139a 720 2 376 19 0 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_158100525 chr19:55206479-55225218 Sample_02_1581 Renal OS-LM1 525 3 611 34 1 14 308 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_019600444 chr19:55206493-55217403 Sample_02_0196 Stomach NCC59 444 2 374 18 0 14 307 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3
SE_02_123300049 chr19:55206517-55217742 Sample_02_1233 Lung PC9_miR-4497 mimic 49 4 389 21 0 14 306 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_137300222 chr19:55206551-55217952 Sample_02_1373 Pancreas PANC1-untreated 222 3 393 23 0 14 305 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_047800537 chr19:55206568-55217297 Sample_02_0478 Colon normal colon mucosa 537 2 368 17 0 14 304 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_127500546 chr19:55206576-55218038 Sample_02_1275 Prostate PC3_Vorinostat 546 9 394 23 0 14 304 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_110500441 chr19:55206619-55230284 Sample_02_1105 Brain NBL-S 441 4 839 49 2 40 1128 PTPRH,TMEM86B,PPP6R1,SYT5,HSPBP1,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803
SE_02_015800579 chr19:55206648-55218030 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 579 2 386 23 0 14 294 PTPRH,SYT5,C19ORF51,PPP6R1,TMEM86B,TNNI3
SE_02_111500973 chr19:55206668-55217220 Sample_02_1115 Liver HepG2 973 4 355 16 0 14 293 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_114800482 chr19:55206731-55217289 Sample_02_1148 Kidney WT 9-12_control_vehicle 482 2 356 17 0 14 286 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_068701227 chr19:55206758-55219012 Sample_02_0687 Lung NCI-H146_no infection 1227 4 405 24 0 14 280 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_123200055 chr19:55206777-55217475 Sample_02_1232 Lung PC9_siMED13L-2 55 4 356 18 0 14 274 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_123100077 chr19:55206803-55217709 Sample_02_1231 Lung PC9_siMED13L-1 77 5 369 21 0 13 272 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_054700273 chr19:55206847-55217788 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 273 4 369 21 0 13 268 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_103602178 chr19:55207428-55210040 Sample_02_1036 Mammary gland HCC70_XY018 2178 1 58 2 0 8 127 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
Genomic distribution of SEs associated with TNNI3
Genome Browser

The strength of the tissue affected by the gene

Expression of TNNI3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)