SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000185361
Gene: TNFAIP8L1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:4639516-4655568 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_153900407 chr19:4536104-4598651 Sample_02_1539 Nasopharyngeal C666-1 407 23 2002 77 3 214 2765 SEMA6B,LRG1,TNFAIP8L1,PLIN4,PLIN5
SE_02_138100375 chr19:4537247-4598458 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 375 22 1959 74 3 213 2714 SEMA6B,LRG1,TNFAIP8L1,PLIN4,PLIN5
SE_02_057500232 chr19:4537298-4612680 Sample_02_0575 Blood MOLM13_sgLKB1e2 232 19 2413 99 3 223 2704 SEMA6B,LRG1,TNFAIP8L1,PLIN4,PLIN5
SE_02_099400225 chr19:4539110-4612408 Sample_02_0994 Blood MOLM13_SIK3TQ 225 16 2304 92 3 203 2339 SEMA6B,LRG1,TNFAIP8L1,PLIN4,PLIN5
SE_02_154101035 chr19:4555221-4598647 Sample_02_1541 Nasopharyngeal HNE1 1035 11 1330 50 0 79 749 SEMA6B,TNFAIP8L1,PLIN4,LRG1,PLIN5
SE_02_050600542 chr19:4555495-4598928 Sample_02_0506 Esophagus TE5_1 542 11 1331 50 0 78 680 SEMA6B,TNFAIP8L1,PLIN4,LRG1,PLIN5
SE_02_051700536 chr19:4555496-4598927 Sample_02_0517 Esophagus TE5 536 12 1330 50 0 78 680 SEMA6B,TNFAIP8L1,PLIN4,LRG1,PLIN5
SE_02_050500557 chr19:4555751-4598867 Sample_02_0505 Esophagus KYSE70_1 557 17 1320 50 0 75 630 SEMA6B,TNFAIP8L1,PLIN4,LRG1,PLIN5
SE_02_051600560 chr19:4555751-4598867 Sample_02_0516 Esophagus KYSE70 560 18 1320 50 0 75 630 SEMA6B,TNFAIP8L1,PLIN4,LRG1,PLIN5
SE_02_133400109 chr19:4556938-4598684 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 109 10 1286 50 0 73 459 SEMA6B,TNFAIP8L1,PLIN4,LRG1,PLIN5
SE_02_063200483 chr19:4563407-4607569 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 483 16 1370 48 0 66 0 TNFAIP8L1,PLIN4,LRG1,PLIN5,SEMA6B
SE_02_063300437 chr19:4563616-4607269 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 437 15 1354 48 0 66 0 TNFAIP8L1,PLIN4,LRG1,PLIN5,SEMA6B
SE_02_037800091 chr19:4564554-4607859 Sample_02_0378 Skeletal muscle SCMC 91 7 1328 49 0 66 0 PLIN4,TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_038000441 chr19:4564624-4598024 Sample_02_0380 Skeletal muscle RH18 441 5 1038 41 0 51 0 PLIN4,TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_107800418 chr19:4565161-4607303 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 418 19 1289 46 0 66 0 TNFAIP8L1,PLIN4,LRG1,PLIN5,SEMA6B
SE_02_108000374 chr19:4565165-4599056 Sample_02_1080 Muscle JR1 shCtrl 374 16 1042 41 0 59 0 TNFAIP8L1,PLIN4,LRG1,PLIN5,SEMA6B
SE_02_141300520 chr19:4565172-4615957 Sample_02_1413 Muscle RH4_sgBRG1 520 15 1599 76 0 66 0 TNFAIP8L1,PLIN4,LRG1,PLIN5,SEMA6B
SE_02_107900426 chr19:4565470-4607578 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 426 16 1290 47 0 66 0 TNFAIP8L1,PLIN4,LRG1,PLIN5,SEMA6B
SE_02_108100438 chr19:4565575-4599288 Sample_02_1081 Muscle CTR shCtrl 438 17 1036 41 0 60 0 TNFAIP8L1,PLIN4,LRG1,PLIN5,SEMA6B
SE_01_002100772 chr19:4566055-4598894 Sample_01_0021 Skin bipolar-neuron 772 6 1007 41 0 57 0 PLIN4,TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_037500108 chr19:4566064-4617643 Sample_02_0375 Skeletal muscle RMS216 108 14 1637 82 0 66 0 PLIN4,TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_074000627 chr19:4567041-4600733 Sample_02_0740 Muscle RH3 627 15 1040 40 0 60 0 TNFAIP8L1,PLIN4,LRG1,PLIN5,SEMA6B
SE_02_036900403 chr19:4570052-4599406 Sample_02_0369 Skeletal muscle RD 403 4 890 36 0 59 0 TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_037900403 chr19:4570052-4599406 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 403 4 890 36 0 59 0 TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_037300408 chr19:4570169-4599688 Sample_02_0373 Skeletal muscle RMS206 408 6 892 36 0 59 0 TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_021101184 chr19:4571310-4599061 Sample_02_0211 Lung MRC-5_NFD_1DPT 1184 9 835 36 0 58 0 TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_093200519 chr19:4574818-4620661 Sample_02_0932 Embryo H9 WT_1 519 11 1407 75 0 64 0 TNFAIP8L1,MYDGF,LRG1,PLIN5,SEMA6B
SE_02_096200969 chr19:4580096-4610637 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 969 5 905 50 0 58 0 TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_138400840 chr19:4580512-4610456 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 840 8 892 47 0 48 0 TNFAIP8L1,PLIN5,LRG1,SEMA6B
SE_02_133000626 chr19:4584084-4636910 Sample_02_1330 Blood AMU-AML1 626 15 1588 77 1 38 0 TNFAIP8L1,DPP9-AS1,MYDGF,LRG1,PLIN5,SEMA6B
SE_02_103100425 chr19:4593871-4637274 Sample_02_1031 Head and neck SCC1 contol 425 11 1319 63 1 18 0 TNFAIP8L1,DPP9-AS1,SEMA6B,MYDGF
SE_02_132201193 chr19:4616560-4636896 Sample_02_1322 Connective Tissue HT1080_WT 1193 4 556 21 1 0 0 TNFAIP8L1,DPP9-AS1,MYDGF
SE_02_087200365 chr19:4618463-4637155 Sample_02_0872 Colon HCT116_siCtrl-5FU 365 8 497 16 1 0 0 TNFAIP8L1,DPP9-AS1,MYDGF
SE_02_087300479 chr19:4618488-4634015 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 479 5 413 15 1 0 0 TNFAIP8L1,DPP9-AS1,MYDGF
SE_02_087000152 chr19:4618644-4634590 Sample_02_0870 Colon HCT116_GLIS2.1-DMSO 152 3 429 15 1 0 0 TNFAIP8L1,DPP9-AS1,MYDGF
SE_02_021600081 chr19:4667773-4717559 Sample_02_0216 Skin NHEK_scramble 81 15 1591 72 0 109 3211 DPP9,C19ORF10,TNFAIP8L1
SE_01_007600342 chr19:4668680-4725887 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 342 3 1878 83 2 111 3634 DPP9,C19ORF10,TNFAIP8L1,MIR7-3,C19ORF30
SE_02_036700123 chr19:4672191-4733166 Sample_02_0367 Skeletal muscle NS129 123 10 1968 80 2 104 3422 DPP9,TNFAIP8L1,MIR7-3,C19ORF10,C19ORF30
SE_02_036800187 chr19:4672240-4725002 Sample_02_0368 Skeletal muscle NS134 187 7 1721 72 2 104 3422 DPP9,TNFAIP8L1,MIR7-3,C19ORF10,C19ORF30
SE_01_009700125 chr19:4672374-4722033 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 125 10 1589 69 2 103 3087 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF,MIR7-3
SE_01_009400325 chr19:4672477-4725364 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 325 9 1723 72 2 104 3422 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF,MIR7-3
SE_01_006100066 chr19:4673764-4724557 Sample_01_0061 Prostate RWPE1 66 8 1634 67 2 104 3387 DPP9,TNFAIP8L1,MIR7-3,C19ORF10,C19ORF30
SE_02_133400046 chr19:4674746-4720309 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 46 19 1468 59 2 102 3087 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF
SE_02_143301800 chr19:4674766-4717950 Sample_02_1433 Bone A673 STAG2 null 1800 23 1387 54 1 102 2972 DPP9,DPP9-AS1,TNFAIP8L1,MYDGF
SE_02_104800578 chr19:4674827-4721233 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 578 11 1500 60 2 102 3087 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF,MIR7-3
SE_02_042200125 chr19:4675928-4726486 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 125 9 1655 65 2 102 3233 DPP9,TNFAIP8L1,MIR7-3,C19ORF10,C19ORF30
SE_02_043300179 chr19:4675964-4726509 Sample_02_0433 Lung NCI-H1299_EGFP-NEO_reporter_cells_DAC 179 10 1656 65 2 102 3226 DPP9,TNFAIP8L1,MIR7-3,C19ORF10,C19ORF30
SE_02_138300215 chr19:4676003-4731249 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 215 33 1783 69 2 102 3217 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF,MIR7-3
SE_02_116600044 chr19:4676160-4723935 Sample_02_1166 Biliary H69_TGF beta_16h_1 44 8 1532 64 2 101 3057 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF,MIR7-3
SE_02_088600351 chr19:4682197-4725677 Sample_02_0886 Skin foreskin_ p63KLF4 351 12 1494 61 2 99 2755 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF,MIR7-3
SE_02_115000078 chr19:4682802-4718807 Sample_02_1150 Kidney WT 9-12_Nrf2 knockout_vehicle 78 11 1235 51 1 90 2233 DPP9,DPP9-AS1,TNFAIP8L1,MYDGF
SE_02_116800064 chr19:4683138-4723838 Sample_02_1168 Biliary H69_TGF Vehicle_2 64 8 1366 60 2 89 2436 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF,MIR7-3
SE_02_116700064 chr19:4683264-4723828 Sample_02_1167 Biliary H69_TGF Vehicle_1 64 7 1363 60 2 83 2393 DPP9,DPP9-AS1,TNFAIP8L1,MIR7-3HG,MYDGF,MIR7-3
SE_02_133300079 chr19:4683956-4718022 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 79 15 1163 49 1 60 1913 DPP9,DPP9-AS1,TNFAIP8L1,MYDGF
SE_02_008100398 chr19:4684744-4725108 Sample_02_0081 Blood Monocyte-derived_dendritic_cells 398 8 1389 60 2 60 2200 DPP9,TNFAIP8L1,MIR7-3,C19ORF10,C19ORF30
SE_02_036600434 chr19:4686460-4716099 Sample_02_0366 Skeletal muscle NCI0082 434 4 984 41 0 51 1424 DPP9,TNFAIP8L1,C19ORF10
SE_02_114500566 chr19:4688674-4720377 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 566 18 1092 48 2 51 1508 DPP9,TNFAIP8L1,MIR7-3HG,DPP9-AS1,MYDGF
SE_02_008700442 chr19:4688980-4726538 Sample_02_0087 Pancreas MiaPaca2 442 3 1297 55 2 51 1774 DPP9,TNFAIP8L1,MIR7-3,C19ORF10,C19ORF30
SE_02_154101130 chr19:4689211-4714793 Sample_02_1541 Nasopharyngeal HNE1 1130 6 852 37 0 43 1295 DPP9,TNFAIP8L1,DPP9-AS1,MYDGF
SE_02_038000491 chr19:4689530-4719156 Sample_02_0380 Skeletal muscle RH18 491 4 1021 45 1 49 1256 DPP9,TNFAIP8L1,C19ORF30,C19ORF10
SE_02_072300440 chr19:4689968-4725529 Sample_02_0723 Pancreas MIAPaca2 WT 440 13 1236 54 2 42 1618 DPP9,TNFAIP8L1,MIR7-3HG,DPP9-AS1,MYDGF,MIR7-3
Genomic distribution of SEs associated with TNFAIP8L1
Genome Browser

The strength of the tissue affected by the gene

Expression of TNFAIP8L1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)