SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000072954
Gene: TMEM38A Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:16661139-16690023 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_115100173 chr19:16509904-16620353 Sample_02_1151 Mammary gland MCF-7_UNTR 173 47 3142 259 4 359 4959 C19ORF44,CHERP,SLC35E1,MED26,CALR3,TMEM38A,EPS15L1,SMIM7
SE_02_039600227 chr19:16514408-16625915 Sample_02_0396 Skin NHEK-D 227 28 3197 262 5 373 4682 SLC35E1,CHERP,MED26,C19ORF44,TMEM38A,C19ORF42,EPS15L1,CALR3
SE_02_083500437 chr19:16548844-16612824 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 437 9 1729 159 3 186 2087 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_143100647 chr19:16549834-16630237 Sample_02_1431 Blood T cell 647 11 2179 192 4 257 2284 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_104600769 chr19:16553216-16619875 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 769 23 1822 171 3 183 1631 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_055200196 chr19:16555455-16623126 Sample_02_0552 Other SYO1 shCt 196 23 1842 171 3 174 1388 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_036700272 chr19:16560872-16630664 Sample_02_0367 Skeletal muscle NS129 272 11 1891 168 4 237 1582 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_02_023400853 chr19:16561234-16627731 Sample_02_0234 Tonsil Th17 853 11 1811 164 4 191 1377 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_02_045600398 chr19:16564209-16616251 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 398 12 1423 128 3 169 1365 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_012800177 chr19:16564404-16630453 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 177 14 1794 157 4 237 1582 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_01_008400412 chr19:16565632-16614023 Sample_01_0084 Spleen spleen 412 8 1297 120 2 168 1283 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_02_149200503 chr19:16565842-16630007 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 503 14 1719 149 3 237 1464 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_151000480 chr19:16566316-16617472 Sample_02_1510 Lung H3122_LR_Pano 480 21 1383 126 2 169 1188 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_138300175 chr19:16568098-16630219 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 175 23 1660 146 3 231 1305 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_116800693 chr19:16568122-16630425 Sample_02_1168 Biliary H69_TGF Vehicle_2 693 16 1671 147 3 231 1302 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_138100564 chr19:16568124-16618300 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 564 20 1344 125 2 165 1085 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_003200259 chr19:16568375-16629724 Sample_02_0032 Pancreas pancreatic-islets-M 259 9 1642 145 3 229 1255 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_02_074700702 chr19:16568434-16615451 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 702 27 1262 117 2 161 1038 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_046601129 chr19:16569026-16622139 Sample_02_0466 Adipose visceral adipocytes 1129 29 1439 132 2 166 1038 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_01_006900214 chr19:16569068-16630593 Sample_01_0069 Adrenal gland adrenal-gland 214 12 1653 147 3 229 1255 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_00_002200193 chr19:16569196-16629738 Sample_00_0022 Lung lung_30y 193 14 1620 144 3 229 1255 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_02_138500348 chr19:16569775-16630404 Sample_02_1385 Other iPSCs 348 17 1632 145 3 229 1255 SLC35E1,MED26,CHERP,TMEM38A,SMIM7
SE_02_021300130 chr19:16570747-16632950 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 130 7 1652 152 3 228 1255 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_01_002400472 chr19:16570983-16615540 Sample_01_0024 Blood CD14-positive-monocyte 472 6 1192 113 2 160 1038 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_02_028400418 chr19:16571058-16630318 Sample_02_0284 Pelvis patient 119 418 12 1580 141 3 228 1255 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_02_001900313 chr19:16571605-16637742 Sample_02_0019 Embryo Neural crest cells 313 13 1738 153 3 217 1191 SLC35E1,MED26,C19ORF42,TMEM38A,CHERP
SE_02_032100086 chr19:16572504-16634831 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 86 6 1646 151 3 185 962 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_032000187 chr19:16572512-16633938 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 187 11 1626 151 3 185 961 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_01_004000160 chr19:16572513-16630949 Sample_01_0040 Haematopoietic and lymphoid tissue Karpas-422 160 7 1559 143 3 185 961 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_01_006700173 chr19:16572527-16631269 Sample_01_0067 Peritoneal effusion: derived from metastatic site: peritoneal cavity SUDHL6 173 7 1564 143 3 185 958 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_122400218 chr19:16572620-16655376 Sample_02_1224 Bone marrow normal plasma cell 218 31 2252 203 3 188 1289 SMIM7,MED26,CHERP,TMEM38A,SLC35E1
SE_01_005500283 chr19:16573899-16630998 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 283 5 1535 141 3 182 950 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_142900163 chr19:16574418-16633063 Sample_02_1429 Blood GM12878_WT 163 20 1563 145 3 181 950 MED26,CHERP,TMEM38A,SMIM7,SLC35E1,C19orf44,CALR3
SE_02_046500263 chr19:16574462-16625122 Sample_02_0465 Adipose subcutaneous adipocytes 263 32 1382 129 3 119 733 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_130200395 chr19:16574696-16638960 Sample_02_1302 Lymphoma RL DMSO 395 25 1707 151 3 181 950 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_143200530 chr19:16577289-16650522 Sample_02_1432 Bone A673 STAG2 WT 530 30 2007 185 3 122 653 SMIM7,MED26,CHERP,TMEM38A,SLC35E1
SE_00_005100298 chr19:16577451-16625079 Sample_00_0051 Adrenal gland adrenal gland 30y 298 24 1291 128 3 49 219 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_031200553 chr19:16580333-16631026 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 553 7 1357 135 3 101 266 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_089201320 chr19:16580513-16630452 Sample_02_0892 Heart left ventricle_LV1215 1320 13 1342 132 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_110500445 chr19:16580551-16630404 Sample_02_1105 Brain NBL-S 445 22 1338 130 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_088901199 chr19:16580680-16630449 Sample_02_0889 Heart left ventricle_LV1183 1199 11 1335 131 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_01_009800825 chr19:16580770-16630437 Sample_01_0098 Heart left ventricle_51y 825 13 1329 130 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_143300484 chr19:16580829-16646853 Sample_02_1433 Bone A673 STAG2 null 484 30 1792 171 3 101 375 SMIM7,MED26,CHERP,TMEM38A,SLC35E1
SE_02_115500276 chr19:16580851-16632130 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 276 7 1363 137 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_115300301 chr19:16580864-16637982 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 301 10 1501 143 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_108300947 chr19:16580865-16634527 Sample_02_1083 Macula macula 947 17 1422 141 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_012100104 chr19:16581044-16631312 Sample_02_0121 Haematopoietic and lymphoid tissue SUDHL-4 104 6 1342 133 3 101 266 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_034200908 chr19:16581165-16615056 Sample_02_0342 Liver HSPCs_F0 908 8 909 100 2 32 49 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_115400332 chr19:16581183-16638053 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 332 8 1496 143 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_075100063 chr19:16581191-16630342 Sample_02_0751 Lymphoma Rec-1_WO 63 10 1314 130 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_01_005300225 chr19:16581229-16631911 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 225 11 1348 137 3 101 266 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_121800062 chr19:16581247-16632796 Sample_02_1218 Bone marrow Daudi 62 26 1367 139 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_075000093 chr19:16581375-16630325 Sample_02_0750 Lymphoma Rec-1_GSI 93 10 1307 130 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_115200346 chr19:16581460-16631203 Sample_02_1152 Lymphoma RL_WT_gRNA1 346 12 1323 133 3 101 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_130400797 chr19:16581591-16630704 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 797 17 1314 131 3 96 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_106500217 chr19:16581752-16630336 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 217 10 1298 130 3 96 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_104800442 chr19:16581766-16619800 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 442 22 1023 111 2 30 49 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_130300681 chr19:16582033-16631318 Sample_02_1303 Lymphoma RL_tazemetostat 681 15 1309 130 3 96 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_038700203 chr19:16583037-16616838 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 203 12 903 97 2 28 49 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_028800259 chr19:16583365-16630533 Sample_02_0288 Tonsil CB5_H3K27Ac 259 7 1258 123 2 94 266 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_011700210 chr19:16583422-16630716 Sample_02_0117 Haematopoietic and lymphoid tissue KARPAS-422 210 7 1258 122 2 94 266 MED26,C19ORF42,TMEM38A,CHERP,SLC35E1
SE_02_131800257 chr19:16583782-16615638 Sample_02_1318 Brain hMGLs_SORL1-A528T 257 7 852 88 1 24 49 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_061100573 chr19:16583852-16637550 Sample_02_0611 Liposarcoma DDLPS_T1 573 19 1407 130 1 92 266 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_131300344 chr19:16583857-16613399 Sample_02_1313 Brain hMGLs_CD33_SNP 344 6 776 83 0 22 49 MED26,CHERP,TMEM38A,SMIM7,SLC35E1
SE_02_076400575 chr19:16602741-16630377 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 575 9 775 73 1 74 217 MED26,TMEM38A,SMIM7,SLC35E1
SE_02_078100538 chr19:16613167-16635798 Sample_02_0781 Lymphoma Pfeiffer_DMSO 538 1 601 46 1 70 217 MED26,TMEM38A,SMIM7,SLC35E1
SE_02_111201056 chr19:16615182-16651461 Sample_02_1112 T lymphocyte THP-6 T-ALL 1056 9 1011 84 1 70 390 SMIM7,MED26,TMEM38A,SLC35E1
SE_02_066000743 chr19:16701372-16738235 Sample_02_0660 Mammary gland MCF10DCIS 743 9 1163 79 1 0 405 NWD1,SMIM7,TMEM38A
SE_02_147400062 chr19:16701541-16740183 Sample_02_1474 Bone CHLA-10 62 10 1205 81 1 0 444 NWD1,SMIM7,TMEM38A
SE_02_128000366 chr19:16702357-16740400 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 366 12 1188 81 1 0 444 NWD1,SMIM7,TMEM38A
SE_02_148000343 chr19:16709698-16740644 Sample_02_1480 Bone MHH-ES-1 343 13 939 63 1 0 444 NWD1,SMIM7,TMEM38A
Genomic distribution of SEs associated with TMEM38A
Genome Browser

The strength of the tissue affected by the gene

Expression of TMEM38A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)