SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000284701
Gene: TMEM247 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:46479565-46484425 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143400089 chr2:46387009-46439590 Sample_02_1434 Trophoblast trophoblast stem cells 89 9 1813 139 15 21 93 LOC101805491,TMEM247
SE_02_143500047 chr2:46387992-46440847 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 47 10 1817 139 14 27 151 LOC101805491,TMEM247
SE_02_136100188 chr2:46403881-46470140 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 188 13 2264 199 16 54 266 LOC101805491,TMEM247,ATP6V1E2
SE_02_127800426 chr2:46405794-46443062 Sample_02_1278 Chordoma UCH1_DMSO_48h 426 10 1261 116 13 29 266 LOC101805491,TMEM247
SE_02_124800581 chr2:46430945-46462115 Sample_02_1248 Bladder RT4 581 8 990 83 7 48 173 LOC101805491,TMEM247
SE_02_094800684 chr2:46433588-46461492 Sample_02_0948 Pharyng Detroit562 684 4 882 67 4 48 173 LOC101805491,TMEM247
SE_02_096200954 chr2:46485073-46505453 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 954 13 622 76 2 27 0 TMEM247,ATP6V1E2,RHOQ
SE_02_121200355 chr2:46488054-46500991 Sample_02_1212 Brain GBM30 355 7 386 45 1 27 0 TMEM247,ATP6V1E2,RHOQ
SE_02_096000182 chr2:46488075-46502996 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 182 10 443 55 1 27 0 TMEM247,ATP6V1E2,RHOQ
SE_02_097901060 chr2:46488907-46505364 Sample_02_0979 Brain JN14-BS1_H3.3K27M 1060 13 481 61 1 27 0 TMEM247,ATP6V1E2,RHOQ
SE_02_118900610 chr2:46489423-46500734 Sample_02_1189 Brain GBM22 610 6 337 43 1 27 0 TMEM247,ATP6V1E2,RHOQ
SE_02_118500436 chr2:46525490-46555275 Sample_02_1185 Brain GBM14 436 11 870 93 2 175 722 RHOQ,TMEM247,ATP6V1E2,LOC100506142
SE_02_157300821 chr2:46526195-46570628 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 821 14 1235 121 2 198 897 LOC100506142,RHOQ,CRIPT,ATP6V1E2,PIGF,TMEM247
SE_02_104301215 chr2:46527301-46570389 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1215 18 1194 120 2 198 897 LOC100506142,RHOQ,CRIPT,ATP6V1E2,PIGF,TMEM247
Genomic distribution of SEs associated with TMEM247
Genome Browser

The strength of the tissue affected by the gene

Expression of TMEM247

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)