SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000106290
Gene: TAF6 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:100107070-100119841 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_045300469 chr7:100078221-100096386 Sample_02_0453 Neuroblastoma SJNB3 469 1 495 51 2 118 1492 MIR106B,MCM7,COPS6,ZNF3,MIR25,MIR93,ZSCAN21,AP4M1,TAF6,MBLAC1,CNPY4
SE_02_093801269 chr7:100079302-100092209 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1269 2 298 29 1 72 910 ZNF3,COPS6,MCM7,ZSCAN21,AP4M1,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_032800381 chr7:100079890-100090106 Sample_02_0328 Embryo H9_naive 381 2 236 23 1 28 509 COPS6,ZNF3,CNPY4,MIR106B,MIR25,TAF6,MCM7,AP4M1,ZSCAN21,MIR93,MBLAC1
SE_02_063100470 chr7:100084741-100090199 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 470 1 132 12 0 19 299 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_062900544 chr7:100084984-100091361 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 544 2 151 15 0 47 474 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_005500643 chr7:100085305-100092233 Sample_02_0055 Lung IMR-90_Nutlin-3a 643 1 164 18 0 63 612 COPS6,CNPY4,MIR106B,MIR25,TAF6,MCM7,AP4M1,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_005400632 chr7:100085380-100092230 Sample_02_0054 Lung IMR-90_DMSO_1 632 1 163 18 0 63 611 COPS6,CNPY4,MIR106B,MIR25,TAF6,MCM7,AP4M1,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_044800741 chr7:100085584-100090645 Sample_02_0448 Bone MNNG 741 1 115 14 0 34 374 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_072700597 chr7:100085637-100092659 Sample_02_0727 Fetal lung IMR90_Etoposide 597 1 169 20 0 63 646 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_143301506 chr7:100085684-100089919 Sample_02_1433 Bone A673 STAG2 null 1506 1 93 12 0 19 259 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_146900589 chr7:100085764-100089659 Sample_02_1469 Umbilical Vein HUVEC 589 1 83 12 0 18 226 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_147100969 chr7:100085800-100090589 Sample_02_1471 Blood Outgrowth Endothelia BOEC 969 1 107 14 0 34 366 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_147200930 chr7:100085878-100091885 Sample_02_1472 Fetal lung IMR-90 930 2 137 16 0 63 564 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_135501049 chr7:100085915-100091110 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 1049 1 112 14 0 42 431 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_132201148 chr7:100086006-100089821 Sample_02_1322 Connective Tissue HT1080_WT 1148 1 81 12 0 19 250 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_143601484 chr7:100087432-100094186 Sample_02_1436 Liver LSEC-Ctrl 1484 1 177 25 0 88 916 MIR106B,MCM7,COPS6,MIR25,MIR93,ZSCAN21,AP4M1,ZNF3,TAF6,MBLAC1,CNPY4
SE_00_001600329 chr7:100097985-100103110 Sample_00_0016 Foreskin iPS-DF-19.11 334 1 177 15 1 77 946 AP4M1,MCM7,CNPY4,C7ORF59,MIR25,TAF6,COPS6,MIR106B,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_101701432 chr7:100098052-100103574 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1432 1 188 17 1 77 1000 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_146900751 chr7:100098252-100103389 Sample_02_1469 Umbilical Vein HUVEC 751 1 178 16 0 70 935 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_058400578 chr7:100098533-100103067 Sample_02_0584 Lung H1299 WT 578 1 156 15 0 70 842 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_097200740 chr7:100098916-100103471 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 740 1 158 14 0 59 833 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_115900481 chr7:100098970-100103969 Sample_02_1159 Mammary gland MCF7 481 1 179 16 0 65 919 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_085200479 chr7:100098970-100103985 Sample_02_0852 Mammary gland MCF7L-P 479 1 180 16 0 65 919 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_068500232 chr7:100099223-100102912 Sample_02_0685 Lung NCI-H1048_no infection 232 1 130 12 0 51 718 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_096800486 chr7:100099326-100103103 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 486 1 129 12 0 51 732 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_00_001001231 chr7:100099338-100102963 Sample_00_0010 Embryo endodermal-cell 1231 1 126 12 0 50 705 AP4M1,MCM7,CNPY4,C7ORF59,MIR25,TAF6,COPS6,MIR106B,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_085400627 chr7:100099443-100102847 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 627 1 111 12 0 44 668 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_143300226 chr7:100099454-100103632 Sample_02_1433 Bone A673 STAG2 null 226 1 132 14 0 46 785 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_143200448 chr7:100099468-100103022 Sample_02_1432 Bone A673 STAG2 WT 448 1 114 12 0 45 701 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_126301470 chr7:100099469-100103470 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1470 1 129 13 0 46 758 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_126800509 chr7:100099958-100104201 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 509 1 139 16 0 50 821 MCM7,AP4M1,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_066300613 chr7:100121164-100138688 Sample_02_0663 Thyroid TT 613 2 419 51 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_115900219 chr7:100121196-100130282 Sample_02_1159 Mammary gland MCF7 219 2 233 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_085200218 chr7:100121198-100130279 Sample_02_0852 Mammary gland MCF7L-P 218 2 233 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_077500910 chr7:100121209-100141289 Sample_02_0775 Pancreas EndoC-BH1_SE 910 8 484 57 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,AZGP1
SE_02_123900308 chr7:100121229-100131083 Sample_02_1239 Skin Waga_virus_positive 308 2 244 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_107700261 chr7:100121509-100131164 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 261 3 240 20 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_109900847 chr7:100122193-100131089 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 847 3 202 15 1 43 854 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35,ZKSCAN5
SE_02_020500047 chr7:100123968-100158310 Sample_02_0205 Stomach Gastric_Primary_Sample_T 47 5 864 84 1 142 1947 CNPY4,MBLAC1,C7ORF59,C7ORF43,MIR25,TAF6,MCM7,MIR93,GPC2,GAL3ST4,COPS6,STAG3,MIR106B,ZNF3,AP4M1
SE_00_004900605 chr7:100124549-100154157 Sample_00_0049 Small intestine small intestine 30y 605 5 745 78 1 48 1042 CNPY4,LAMTOR4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_01_008401436 chr7:100147868-100164335 Sample_01_0084 Spleen spleen 1436 3 456 37 0 155 1808 C7ORF43,C7ORF59,GAL3ST4,CNPY4,STAG3,TAF6,MCM7,GPC2,AP4M1,MBLAC1
SE_02_022800512 chr7:100147954-100164589 Sample_02_0228 Oesophagus KYSE510 512 4 462 36 0 155 1808 C7ORF43,C7ORF59,GAL3ST4,CNPY4,STAG3,TAF6,MCM7,GPC2,AP4M1,MBLAC1
SE_02_088601765 chr7:100150818-100163916 Sample_02_0886 Skin foreskin_ p63KLF4 1765 3 354 25 0 141 1614 MIR4658,LAMTOR4,C7ORF43,GAL3ST4,AP4M1,MCM7,STAG3,TAF6,MBLAC1,CNPY4,GPC2
SE_02_047701097 chr7:100152497-100159212 Sample_02_0477 Colon intestinal epithelial organoids_139a 1097 1 191 13 0 119 1268 LAMTOR4,C7ORF43,MIR4658,TAF6,STAG3,MBLAC1,CNPY4,GPC2,GAL3ST4
SE_02_039601958 chr7:100153131-100172339 Sample_02_0396 Skin NHEK-D 1958 7 497 30 1 190 2761 C7ORF43,C7ORF59,GPC2,GAL3ST4,CNPY4,TAF6,PVRIG,STAG3,MBLAC1
SE_02_104901988 chr7:100156123-100159190 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1988 1 71 4 0 72 659 MIR4658,C7ORF43,TAF6,STAG3,MBLAC1,CNPY4,LAMTOR4,GPC2,GAL3ST4
Genomic distribution of SEs associated with TAF6
Genome Browser

The strength of the tissue affected by the gene

Expression of TAF6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)