SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000148248
Gene: SURF4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:133361450-133376166 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602215 chr9:133284436-133345359 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2215 11 1703 285 21 52 1614 MED22,SURF6,SURF2,SNORD24,RPL7A,SURF4,SNORD36C,SNORD36A,STKLD1,ABO,SURF1,SNORD36B
SE_02_021200177 chr9:133344040-133356362 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 177 1 415 40 0 81 1287 RPL7A,MED22,SURF1,SNORD36C,SNORD36B,SNORD36A,SNORD24,C9ORF96,SURF6,SURF2,SURF4
SE_02_032300367 chr9:133345687-133351032 Sample_02_0323 Colon RKO 367 1 186 18 0 41 552 RPL7A,MED22,SNORD36C,SNORD36B,SNORD36A,SNORD24,SURF1,C9ORF96,SURF6,SURF2,SURF4
SE_02_032800592 chr9:133346015-133350467 Sample_02_0328 Embryo H9_naive 592 1 155 17 0 37 487 RPL7A,SNORD24,SNORD36A,MED22,SNORD36B,SURF1,C9ORF96,SURF6,SNORD36C,SURF2,SURF4
SE_02_043600110 chr9:133346071-133350280 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 110 1 145 17 0 32 462 SNORD24,RPL7A,MED22,SNORD36B,SURF1,C9ORF96,SURF6,SNORD36C,SURF2,SURF4,SNORD36A
SE_02_039601806 chr9:133346366-133350579 Sample_02_0396 Skin NHEK-D 1806 1 149 16 0 37 486 RPL7A,SNORD24,SNORD36A,MED22,SNORD36B,SURF1,C9ORF96,SURF6,SNORD36C,SURF2,SURF4
SE_02_043500166 chr9:133346411-133350361 Sample_02_0435 Kidney HEK293A_WT-MEF2B_DMSO_6h 166 1 137 16 0 36 462 SNORD24,RPL7A,MED22,SNORD36B,SURF1,C9ORF96,SURF6,SNORD36C,SURF2,SURF4,SNORD36A
SE_02_058400796 chr9:133346643-133350424 Sample_02_0584 Lung H1299 WT 796 1 136 16 0 34 427 MED22,SNORD24,RPL7A,SNORD36B,SURF2,SURF6,SURF4,SNORD36C,SNORD36A,STKLD1,SURF1
SE_02_104000258 chr9:133352906-133373813 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 258 11 681 69 5 93 1740 SURF1,SURF2,SURF4,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,STKLD1,MED22,SURF6,SNORD36B
SE_02_108301122 chr9:133357978-133377183 Sample_02_1083 Macula macula 1122 8 632 66 5 90 1619 STKLD1,SURF2,SURF4,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,MED22,SURF6,SURF1,SNORD36B
SE_02_104801350 chr9:133358634-133373261 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1350 10 488 46 5 62 1126 SURF2,SURF4,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,STKLD1,MED22,SURF6,SURF1,SNORD36B
SE_01_010101472 chr9:133359132-133376693 Sample_01_0101 Pancreas pancreas_54y 1472 10 580 60 5 90 1600 STKLD1,SURF2,SURF4,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,MED22,SURF6,SURF1,SNORD36B
SE_00_005100760 chr9:133359573-133381429 Sample_00_0051 Adrenal gland adrenal gland 30y 760 16 694 65 5 94 1701 STKLD1,SURF2,SURF4,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,MED22,SURF6,SURF1,SNORD36B
SE_00_004900497 chr9:133359727-133373519 Sample_00_0049 Small intestine small intestine 30y 497 8 458 46 5 62 1126 SURF2,SURF4,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,STKLD1,MED22,SURF6,SURF1,SNORD36B
SE_02_104100251 chr9:133361180-133373016 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 251 10 378 32 4 55 911 SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,STKLD1,MED22,SURF6,SURF1,SNORD36B
SE_02_104500499 chr9:133365077-133373556 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 499 8 269 29 4 28 400 SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,STKLD1,MED22,SURF6,SURF1,SNORD36B
SE_02_138800592 chr9:133368877-133376153 Sample_02_1388 Peripheral blood JB6_ALK+ 592 2 212 29 3 36 441 SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,STKLD1,MED22,SURF6,SURF1,SNORD36B
SE_02_111200703 chr9:133368907-133380205 Sample_02_1112 T lymphocyte THP-6 T-ALL 703 1 327 35 3 43 713 STKLD1,SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,MED22,SURF6,SURF1,SNORD36B
SE_02_081601397 chr9:133369725-133376942 Sample_02_0816 Ovary Clear cell ovarian cancer 1397 5 220 26 3 35 631 STKLD1,SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,MED22,SURF6,SURF1,SNORD36B
SE_02_077500883 chr9:133370474-133401489 Sample_02_0775 Pancreas EndoC-BH1_SE 883 11 861 97 3 52 1915 STKLD1,SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,MED22,SURF6,SURF1,SNORD36B
SE_02_158401379 chr9:133371161-133379979 Sample_02_1584 Brain U87 GBM_Mock 1379 3 257 26 2 37 650 STKLD1,SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,MED22,SURF6,SURF1,SNORD36B
SE_02_138600638 chr9:133371252-133376101 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 638 3 144 20 2 27 355 SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,STKLD1,MED22,SURF6,SURF1,SNORD36B
SE_02_142701023 chr9:133374102-133376810 Sample_02_1427 Shoulder fibroblast_343 1023 1 95 12 0 26 493 STKLD1,SURF4,SURF2,REXO4,ADAMTS13,SNORD24,RPL7A,SNORD36C,SNORD36A,MED22,SURF6,SURF1,SNORD36B
SE_02_021601005 chr9:133385223-133404014 Sample_02_0216 Skin NHEK_scramble 1005 7 555 83 2 22 1499 C9ORF96,SURF1,ADAMTS13,SNORD36B,SURF6,RPL7A,SNORD36C,MED22,SNORD24,REXO4,SURF2,SURF4,SNORD36A
SE_02_104901275 chr9:133400383-133429016 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1275 10 945 158 5 77 2524 REXO4,ADAMTS13,STKLD1,SURF2,SURF1,SURF4,SNORD36A,CACFD1,SNORD36C
SE_02_103200596 chr9:133419644-133453647 Sample_02_1032 Head and neck SCC1 JQ1 596 9 1057 132 3 116 2604 ADAMTS13,REXO4,SURF4,STKLD1,CACFD1,SLC2A6
SE_02_077500486 chr9:133419956-133464195 Sample_02_0775 Pancreas EndoC-BH1_SE 486 11 1374 158 6 166 3900 ADAMTS13,CACFD1,REXO4,SURF4,STKLD1,SLC2A6
SE_02_102900913 chr9:133423467-133493893 Sample_02_1029 Colon HCT116 913 24 2252 230 7 257 5992 ADAMTS13,CACFD1,SLC2A6,REXO4,ADAMTSL2,SURF4,STKLD1,TMEM8C
SE_02_087200353 chr9:133423656-133456898 Sample_02_0872 Colon HCT116_siCtrl-5FU 353 9 1058 127 3 119 2866 ADAMTS13,REXO4,SURF4,STKLD1,CACFD1,SLC2A6
Genomic distribution of SEs associated with SURF4
Genome Browser

The strength of the tissue affected by the gene

Expression of SURF4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)